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| # Resources Directory | ||
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| When you first create a Genvisis project, Genvisis will create a resources directory, **.genvisis/**, in your home directory. This directory contains files that are used across Genvisis projects. | ||
| * Linux/Mac: $HOME/.genvisis/ | ||
| * Windows: C:\Users\[username]\.genvisis\ | ||
| - Linux/Mac: $HOME/.genvisis/ | ||
| - Windows: C:\Users\[username]\.genvisis\ | ||
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| The **.genvisis/** directory contains the following sub-directories and files. | ||
| * example/ | ||
| * projects/ (contains **.properties** files for each project created) | ||
| * resources/ | ||
| * Arrays/ | ||
| - example/ | ||
| - projects/ (contains **.properties** files for each project created) | ||
| - resources/ | ||
| - Arrays/ | ||
| * AffySnp6/ (contains Affymetrix arrays and support files) | ||
| * CNV/ (contains Hidden Markov Model [**.hmm**] files used in CNV calling) | ||
| * Genome/ (contains resource files for human genome builds hg18, hg19, and hg38) | ||
| * HapMap/ (contains resource files for HapMap samples) | ||
| * custom_path (the full path of **.genvisis/**) | ||
| * Launch.bat (running this file will launch Genvisis on Windows) | ||
| * Launch.command (running this file will launch Genvisis on Linux/Mac) | ||
| * launch.properties (contains properties used by all Genvisis projects, for example, the path to PLINK and the locations of resources/ and projects/) | ||
| * Launch.sh (running this file will launch Genvisis on Linux/Mac) | ||
| - CNV/ (contains Hidden Markov Model [**.hmm**] files used in CNV calling) | ||
| - Genome/ (contains resource files for human genome builds hg18, hg19, and hg38) | ||
| - HapMap/ (contains resource files for HapMap samples) | ||
| - custom_path (the full path of **.genvisis/**) | ||
| - Launch.bat (running this file will launch Genvisis on Windows) | ||
| - Launch.command (running this file will launch Genvisis on Linux/Mac) | ||
| - launch.properties (contains properties used by all Genvisis projects, for example, the path to PLINK and the locations of resources/ and projects/) | ||
| - Launch.sh (running this file will launch Genvisis on Linux/Mac) |