Update run-sex-checks.md

PankratzLab · Feb 29, 2024 · 136a8f7 · 136a8f7
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diff --git a/RunTheGenvisisWorkflow/run-sex-checks.md b/RunTheGenvisisWorkflow/run-sex-checks.md
@@ -6,3 +6,6 @@ To do so,
 1. provide a file listing one hit wonders (markers that map to one location on a genome and nowhere else)
 2. take information from the BLAST annotation in Step 3
 3. check the box to “Use only X and Y chromosome R values to identify sex discriminating markers”
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+If you do not have either a manifest file that contains probe sequences (for Illumina) or a *.probe_tab file (for Affymetrix), then select the checkbox for requirement 3.3 to use R values to identify sex-discriminating markers.
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