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Update workflow.md
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kbeutel committed Feb 22, 2024
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6 changes: 3 additions & 3 deletions RunAPCCorrectedProject/workflow.md
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Expand Up @@ -7,14 +7,14 @@ Some steps will be flagged as already completed. These are noted below with **Ou
1. _<span style="text-decoration:underline;">Transpose Marker Files to Sample Files</span>_
- Will create **sampRAF** files in **/samples**
2. Run Marker BLAST Annotation
* **Output Already Exists!**
- **Output Already Exists!**
3. Compute GCMODEL File
* **Output Already Exists!**
- **Output Already Exists!**
4. _<span style="text-decoration:underline;">Compute Sample QC Metrics</span>_
5. _<span style="text-decoration:underline;">Identify Excluded Samples</span>_
6. _<span style="text-decoration:underline;">Run Sex Checks</span>_
7. Generate AB Lookup File
* **Output Already Exists!**
- **Output Already Exists!**
8. _<span style="text-decoration:underline;">Create PLINK Genotype Files</span>_
9. _<span style="text-decoration:underline;">Run GWAS QC</span>_
10. Run Ancestry Checks
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