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Temperature instabilities #81

Merged
merged 9 commits into from
Jul 5, 2019
Merged

Temperature instabilities #81

merged 9 commits into from
Jul 5, 2019

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evadelmas
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This PR introduces a new way of scaling the biological rates through the model_parameters function's keyword

  • scale_growth : (default to false) if set to true, normalize growth rates by the growth rate of the smallest producer
  • scale_metabolism : (default to false) if set to true, normalize metabolic rates by the growth rate of the smallest producer
  • scale_maxcons : (default to false) if set to true, normalize maximum consumption rates by the metabolis rates
    This should stabilize systems with temperature dependence (Instability detected when using temperature dependence on consumption rates #74)

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codecov bot commented Jul 5, 2019

Codecov Report

Merging #81 into next will decrease coverage by 0.76%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##             next      #81      +/-   ##
==========================================
- Coverage   87.88%   87.11%   -0.77%     
==========================================
  Files          15       15              
  Lines         883      885       +2     
==========================================
- Hits          776      771       -5     
- Misses        107      114       +7
Impacted Files Coverage Δ
src/make_parameters.jl 98.49% <100%> (+0.02%) ⬆️
src/dBdt.jl 100% <100%> (ø) ⬆️
src/simulate.jl 82.5% <0%> (-17.5%) ⬇️

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Coverage Status

Coverage increased (+0.03%) to 87.119% when pulling f662c54 on temperature_instabilities into 5a6a00d on next.

@evadelmas evadelmas merged commit 768615b into next Jul 5, 2019
@evadelmas evadelmas deleted the temperature_instabilities branch July 5, 2019 17:29
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2 participants