C-State ('C' the Chromatin State) is a webapp written using Vue and d3.js for epigenetic data visualization by biologists. It runs on all web browsers out of the box, and needs minimal user intervention. With C-State you can:
- Automatically retrieve and display data relevant to your interest from whole-genome datasets
- Simultaneously visualize multiple genes/genomic loci across chromosomes
- Identify and filter genes based on user-defined search parameters
- Compare epigenetic profile of gene subsets across multiple cell types and/or experimental conditions
- Generate high quality gene-centric images documenting chromatin State
You can download the source code of C-State using
git clone https://github.com/RKMlab/c-state.git
For alternate versions and a live demo, please visit our homepage.
For detailed usage instructions, please visit the C-State website
If you have any queries or suggestions regarding C-State, please contact:
Divya Tej Sowpati: [email protected]
Surabhi Srivastava: [email protected]
C-State: an interactive web app for simultaneous multi-gene visualization and comparative epigenetic pattern search
Divya Tej Sowpati, Surabhi Srivastava, Jyotsna Dhawan, Rakesh Mishra
BMC Bioinformatics, 2017 18(Suppl 10):392
doi: 10.1186/s12859-017-1786-6