This project contains the PMM-Lab and FSK-Lab extension plugins to the data analytics software KNIME (www.knime.org). They are developed at the Federal Institute for Risk Assessment in Germany (BfR).
FSK-Lab is an open source extension plugin to the Konstanz Information Miner (KNIME). FSK-Lab enables KNIME users to work with FSK models within KNIME.
FSK-Lab may be installed throught the update site https://gitlab.bfr.berlin/silebat/repositories/raw/master/fsklab/. More information about the installation can be found at the Food Risk Labs website
FSK Creator
FSK Runner
FSK to R
FSKX Reader
FSKX Writer
FSK Editor
FSK to metadata
The project hierarchy is described in the wiki.
Changelog is available at changelog.md.
Predictive Microbial Modeling Lab (PMM-Lab) is an open source extension to the Konstanz Information Miner (KNIME). PMM-Lab aims to ease and standardize the statistical analysis of experimental microbial data and the development of predictive microbial models (PMM).
It consists of three components:
- a library of KNIME nodes (called PMM-Lab)
- a library of "standard" workflows
- a HSQL databaase to store experimental data and microbial models
PMM-Lab may be installed using the FSK-Lab update site https://gitlab.bfr.berlin/silebat/repositories/raw/master/fsklab/. More information about the installation can be found at the Food Risk Labs website
Converters
- XML To Table
Editors
DB Data Deleter
Data Creator
Data Editor
Formula Creator
Model Creator
Model Editor
Model Fitting
Model Fitting
PMM Joiner
Readers
ComBase Reader
Data Reader
Formula Reader
Model Reader
NuML Reader- OpenFSMR Converter
PMFX Reader
SBML Reader- Variable Data Reader
XLS Data Reader
XLS Model Reader
Selectors & Viewers
Data Selection
Fitted Parameter View
Predictor View
Predictor View JS (deprecated)
Primary Model Selection
Secondary Model View
Secondary Predictor View
Tertiary Model Selection
Writers
ComBase Writer
Data Writer
Formula Writer
Model Writer
PMFX Writer
- com.jgoodies
- com.thoughtworks.xstream
- de.bund.bfr.formats
- de.bund.bfr.knime.pmm.bfrdbiface.lib
- de.bund.bfr.knime.pmm.common
- de.bund.bfr.knime.pmm.nodes
- de.bund.bfr.knime.pmm.sbml.test
- de.bund.bfr.knime.pmm.target
- de.bund.bfr.knime.pmm.tests
- de.bund.bfr.knime.pmmlab.update.p2
- de.bund.bfr.knime.pmmlab.update.p2.deploy
- JSBML_PMF
- net.sf.jabref
- org.freixas.jcalendar
- org.javers
- org.jdom2
- PMM_FEAT
- quick.dbtable