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@SlavovLab

Slavov Laboratory

We study post-transcriptional regulation at single-cell resolution using https://proteomics.single-cell.net Videos: https://youtube.slavovlab.net

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  1. DO-MS DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    R 24 8

  2. DART-ID DART-ID Public

    DART-ID: retention time alignment and peptide identification confidence updates

    Python 14 4

  3. HIquant HIquant Public

    Forked from nslavov/HIquant

    HIquant: An algorithm for quantifying homologous proteins and proteoforms from bottom-up mass-spec data

    Python 2 1

  4. tissue-ptr tissue-ptr Public

    Forked from afranks86/tissue-ptr

    Code for analyzing post-transcriptional regulation across human tissues (Franks et al., 2017 DOI: 10.1371/journal.pcbi.1005535)

    R 3

Repositories

Showing 10 of 25 repositories
  • QuantQC Public

    QuantQC is a package for quality control (QC) of single-cell proteomics data. It is optimized to work with nPOP, a method for massively parallel sample preparation on glass slides.

    SlavovLab/QuantQC’s past year of commit activity
    HTML 1 0 0 0 Updated Aug 31, 2024
  • decode Public

    Computational pipeline for quantifying amino acid substitutions from alternate RNA decoding

    SlavovLab/decode’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Aug 29, 2024
  • plexDIA Public

    Multiplexed data-independent acquisition (plexDIA) for increasing proteomics throughput. The code is distributed by an MIT license.

    SlavovLab/plexDIA’s past year of commit activity
    R 10 2 0 0 Updated Aug 19, 2024
  • DO-MS Public

    An modular and extensible app for visualization of mass spectrometry data and optimization of data acquisition.

    SlavovLab/DO-MS’s past year of commit activity
    R 24 MIT 8 5 10 Updated Jul 30, 2024
  • CellPermeability Public

    Cell Permeability analysis

    SlavovLab/CellPermeability’s past year of commit activity
    R 0 0 0 0 Updated Jul 27, 2024
  • Single-nucleus-proteomics Public

    Single-nucleus proteomics identifies regulators of protein transport

    SlavovLab/Single-nucleus-proteomics’s past year of commit activity
    R 0 MIT 1 0 0 Updated Jul 2, 2024
  • EMT_TGFB_2023 Public

    Dynamics of single-cell protein covariation during EMT. Analysis of TGF-B induced EMT in MCF10A cells using nPoP and SCoPE2.

    SlavovLab/EMT_TGFB_2023’s past year of commit activity
    R 0 1 1 1 Updated Jun 17, 2024
  • single_cell_oocyte Public

    Here you will find scripts and related files that are behind analyses presented in "Single-cell proteomics reveals decreased abundance of proteostasis and meiosis proteins in advanced maternal age oocytes".

    SlavovLab/single_cell_oocyte’s past year of commit activity
    R 0 MIT 0 0 0 Updated May 15, 2024
  • oocyte_aging Public

    A code repository for the analysis of proteome changes associated with oocyte aging

    SlavovLab/oocyte_aging’s past year of commit activity
    R 0 MIT 0 1 0 Updated Apr 13, 2024
  • SC_Pancreas_KO Public

    Code or analysis in paper: An adult-restricted clock component links circadian rhythms to pancreatic β-cell maturation

    SlavovLab/SC_Pancreas_KO’s past year of commit activity
    R 0 0 0 0 Updated Aug 7, 2023
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