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Merge from master #60

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Merge from master #60

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Commits on Oct 9, 2023

  1. Update build.yml

    @GuilhemSempere
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  2. Delete .github/workflows/test.yml

    @GuilhemSempere
    GuilhemSempere committed Oct 9, 2023
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  3. Update build.yml

    @GuilhemSempere
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  4. Update build.yml

    @GuilhemSempere
    GuilhemSempere committed Oct 9, 2023
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  5. Update build.yml

    @GuilhemSempere
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  6. Delete .github/workflows/manual.yml

    @GuilhemSempere
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  7. Update build.yml

    @GuilhemSempere
    GuilhemSempere committed Oct 9, 2023
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  8. Update build.yml

    @GuilhemSempere
    GuilhemSempere committed Oct 9, 2023
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  9. Update build.yml

    @GuilhemSempere
    GuilhemSempere committed Oct 9, 2023
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  10. Update build.yml

    @GuilhemSempere
    GuilhemSempere committed Oct 9, 2023
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  11. Update build.yml

    @GuilhemSempere
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  12. Update build.yml

    @GuilhemSempere
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Commits on Oct 10, 2023

  1. Merge branch 'master' into homepage

    @GuilhemSempere
    GuilhemSempere committed Oct 10, 2023
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Commits on Oct 11, 2023

  1. Updated FJ-Bytes version

    @GuilhemSempere
    GuilhemSempere committed Oct 11, 2023
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Commits on Oct 12, 2023

  1. Fixed Unit Tests that didn't support assemblies

    @GuilhemSempere
    GuilhemSempere committed Oct 12, 2023
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  2. POM version update

    @GuilhemSempere
    GuilhemSempere committed Oct 12, 2023
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  3. Merge branch 'master' of github.com:SouthGreenPlatform/Gigwa2 into st… 

    …ore_runs_list_in_variants
    @aliceboizet
    aliceboizet committed Oct 12, 2023
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  4. fix: summary of instance content in another jsp + empty database ok (… 

    …have to be verified)
    @GaiaYuuki-dev
    GaiaYuuki-dev committed Oct 12, 2023
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Commits on Oct 13, 2023

  1. Made group overlap problem more explicit for Fst calculation 

    ... also disabling Show button when < 2 metadata values selected
    @GuilhemSempere
    GuilhemSempere committed Oct 13, 2023
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Commits on Oct 16, 2023

  1. Fixed unit-tests (many were out of date)

    @GuilhemSempere
    GuilhemSempere committed Oct 16, 2023
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  2. feat: instance-summary-table -> minor changes

    @GuilhemSempere
    GuilhemSempere committed Oct 16, 2023
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  3. Merge branch 'homepage', fixing a couple of slight issues

    @GuilhemSempere
    GuilhemSempere committed Oct 16, 2023
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Commits on Oct 18, 2023

  1. Adding means to support unlimited number of individual groups

    @GuilhemSempere
    GuilhemSempere committed Oct 18, 2023
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Commits on Oct 19, 2023

  1. Removed unused stuff

    @GuilhemSempere
    GuilhemSempere committed Oct 19, 2023
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  2. Fixed copy-individuals-to-clipboard bug

    @GuilhemSempere
    GuilhemSempere committed Oct 19, 2023
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  3. Fixed several issues for supporting unlimited number of groups

    @GuilhemSempere
    GuilhemSempere committed Oct 19, 2023
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Commits on Oct 20, 2023

  1. Made number of groups only depend on declared "groupColors" array

    sempere authored and sempere committed Oct 20, 2023
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  2. feat: multiple graph ok with bugs

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Oct 20, 2023
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  3. fix: multi graphe ok

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Oct 20, 2023
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Commits on Oct 23, 2023

  1. Merge pull request #71 from SouthGreenPlatform/multipleGropus 

    Multiple gropus
    @GuilhemSempere
    GuilhemSempere committed Oct 23, 2023
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Commits on Oct 25, 2023

  1. fix: all ok but process problem

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Oct 25, 2023
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  2. Tiny bugfix

    @GuilhemSempere
    GuilhemSempere committed Oct 25, 2023
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Commits on Oct 30, 2023

  1. Merge pull request #72 from SouthGreenPlatform/master 

    Merge from master
    @GuilhemSempere
    GuilhemSempere committed Oct 30, 2023
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  2. Fix: reset individual list before feeding it

    @GuilhemSempere
    GuilhemSempere committed Oct 30, 2023
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  3. Merge pull request #73 from SouthGreenPlatform/master 

    Fix: reset individual list before feeding it
    @GuilhemSempere
    GuilhemSempere committed Oct 30, 2023
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Commits on Oct 31, 2023

  1. Fix: slight bug in group memorizing when changing project

    @GuilhemSempere
    GuilhemSempere committed Oct 31, 2023
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  2. Merge pull request #74 from SouthGreenPlatform/master 

    Fix: slight bug in group memorizing when changing project
    @GuilhemSempere
    GuilhemSempere committed Oct 31, 2023
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Commits on Nov 2, 2023

  1. Reduction of the genotype column in the table and addition of known a… 

    …lleles for a variant
    @dorian-grst
    dorian-grst committed Nov 2, 2023
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  2. bookmark multigroups working

    @dorian-grst
    dorian-grst committed Nov 2, 2023
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Commits on Nov 6, 2023

  1. minor change

    @dorian-grst
    dorian-grst committed Nov 6, 2023
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Commits on Nov 7, 2023

  1. Added --excludeCollection=variants_without_runs to dump scripts

    @GuilhemSempere
    GuilhemSempere committed Nov 7, 2023
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Commits on Nov 8, 2023

  1. update known alleles INDEL

    @dorian-grst
    dorian-grst committed Nov 8, 2023
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  2. updating bugged alleles

    @dorian-grst
    dorian-grst committed Nov 8, 2023
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  3. feat: individual's metadata modal's table is now built on server

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 8, 2023
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Commits on Nov 9, 2023

  1. simplify extract unique allele function

    @dorian-grst
    dorian-grst committed Nov 9, 2023
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  2. minor change

    @dorian-grst
    dorian-grst committed Nov 9, 2023
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  3. Merge pull request #75 from SouthGreenPlatform/store_runs_list_in_var… 

    …iants

Store runs list in variants
    @GuilhemSempere
    GuilhemSempere committed Nov 9, 2023
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  4. Merge pull request #76 from SouthGreenPlatform/bookmarkMultiGroups 

    Bookmark multi groups + variant detail popup improvements
    @GuilhemSempere
    GuilhemSempere committed Nov 9, 2023
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Commits on Nov 10, 2023

  1. POM dependency update

    @GuilhemSempere
    GuilhemSempere committed Nov 10, 2023
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Commits on Nov 14, 2023

  1. Implementing gene lookup

    @GuilhemSempere
    GuilhemSempere committed Nov 14, 2023
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  2. feat: bundles files in misc folder + pom.xml update bundle's project … 

    …version
    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 14, 2023
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Commits on Nov 16, 2023

  1. Minor fix

    @GuilhemSempere
    GuilhemSempere committed Nov 16, 2023
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Commits on Nov 17, 2023

  1. feat: begin multiple groups

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 17, 2023
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  2. Merge branch 'master' into multipleGroups

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 17, 2023
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  3. fix: multiple groups on progress

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 17, 2023
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  4. Merge pull request #77 from SouthGreenPlatform/master 

    Minor fix
    @GuilhemSempere
    GuilhemSempere committed Nov 17, 2023
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  5. Fixed genotype display in details popup

    @GuilhemSempere
    GuilhemSempere committed Nov 17, 2023
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  6. Fixed display of individual selection widget for export

    @GuilhemSempere
    GuilhemSempere committed Nov 17, 2023
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  7. Made chart queries compatible with multiple groups

    @GuilhemSempere
    GuilhemSempere committed Nov 17, 2023
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  8. Introduced VariantQueryWrapper... 

    as an attempt to manage variant-level query generation from a single
piece of code, no matter if meant at being used with VariantData or
VariantRunData documents
    @GuilhemSempere
    GuilhemSempere committed Nov 17, 2023
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Commits on Nov 20, 2023

  1. feat: multiplegroup continue

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 20, 2023
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  2. Merge branch 'multipleGroups' of https://github.com/SouthGreenPlatfor… 

    …m/Gigwa2 into multipleGroups
    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 20, 2023
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Commits on Nov 21, 2023

  1. Fixed bug in replicating variant type list into chart window

    @GuilhemSempere
    GuilhemSempere committed Nov 21, 2023
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  2. Fix: found a way to cleanly reset variant IDs' ajaxSelectPicker

    @GuilhemSempere
    GuilhemSempere committed Nov 21, 2023
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  3. Improved the way we directly focus on selected region when applicable

    @GuilhemSempere
    GuilhemSempere committed Nov 21, 2023
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  4. fix: multiplegroups ok but maf 50/50 to fix

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 21, 2023
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  5. Applied reliable reset of Gene-ajaxSelectPicker when changing project

    @GuilhemSempere
    GuilhemSempere committed Nov 21, 2023
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Commits on Nov 22, 2023

  1. Removed commented out code

    @GuilhemSempere
    GuilhemSempere committed Nov 22, 2023
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  2. Minor fix

    @GuilhemSempere
    GuilhemSempere committed Nov 22, 2023
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Commits on Nov 23, 2023

  1. Merge remote-tracking branch 'origin/VariantQueryWrapper' into 

    multipleGroups
    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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  2. Merge branch 'multipleGroups' into geneLookup

    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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  3. Made export and visualization queries support any group number

    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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  4. Merge pull request #78 from SouthGreenPlatform/multipleGroups 

    Made export and visualization queries support any group number
    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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  5. Merge pull request #79 from SouthGreenPlatform/VariantQueryWrapper 

    Introduced VariantQueryWrapper...
    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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  6. Limited number of groups to 2 until we know how to manage discrim flag

    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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  7. Merge pull request #80 from SouthGreenPlatform/multipleGroups 

    Multiple groups
    @GuilhemSempere
    GuilhemSempere committed Nov 23, 2023
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Commits on Nov 24, 2023

  1. load query fixed

    @GaiaYuuki-dev
    GaiaYuuki-dev committed Nov 24, 2023
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  2. Merge pull request #82 from SouthGreenPlatform/query 

    load query fixed
    @GuilhemSempere
    GuilhemSempere committed Nov 24, 2023
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  3. Minor cleanup

    @GuilhemSempere
    GuilhemSempere committed Nov 24, 2023
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Commits on Nov 28, 2023

  1. Simplified support for multiple groups

    @GuilhemSempere
    GuilhemSempere committed Nov 28, 2023
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Commits on Nov 29, 2023

  1. Minor fix

    @GuilhemSempere
    GuilhemSempere committed Nov 29, 2023
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Commits on Nov 30, 2023

  1. Group individuals into populations before passing to export procedures

    @GuilhemSempere
    GuilhemSempere committed Nov 30, 2023
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  2. Conformed to latest role_manager changes

    @GuilhemSempere
    GuilhemSempere committed Nov 30, 2023
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  3. Merge branch 'master' into geneLookup

    @GuilhemSempere
    GuilhemSempere committed Nov 30, 2023
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Commits on Dec 5, 2023

  1. Various UI improvements 

    - moved filter-by-variant-id checkbox
- hid empty runs
- added background color to sample names
    @GuilhemSempere
    GuilhemSempere committed Dec 5, 2023
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Commits on Dec 6, 2023

  1. Merge remote-tracking branch 'origin/master' into geneLookup

    @GuilhemSempere
    GuilhemSempere committed Dec 6, 2023
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Commits on Dec 11, 2023

  1. Fix: Issue in attaching genotype pattern onchange to groups

    @GuilhemSempere
    GuilhemSempere committed Dec 11, 2023
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  2. Merge pull request #85 from SouthGreenPlatform/master 

    Fix: Issue in attaching genotype pattern onchange to groups
    @GuilhemSempere
    GuilhemSempere committed Dec 11, 2023
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  3. Removed unwanted changes / unused stuff

    @GuilhemSempere
    GuilhemSempere committed Dec 11, 2023
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  4. Merge pull request #86 from SouthGreenPlatform/master 

    Removed unwanted changes / unused stuff
    @GuilhemSempere
    GuilhemSempere committed Dec 11, 2023
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Commits on Dec 12, 2023

  1. Re-added accidentally lost geneLookup code

    @GuilhemSempere
    GuilhemSempere committed Dec 12, 2023
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Commits on Dec 14, 2023

  1. Avoided duplication of project / run removal code

    @GuilhemSempere
    GuilhemSempere committed Dec 14, 2023
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  2. Minor fix

    @GuilhemSempere
    GuilhemSempere committed Dec 14, 2023
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  3. Merge pull request #87 from SouthGreenPlatform/geneLookup 

    Gene lookup
    @GuilhemSempere
    GuilhemSempere committed Dec 14, 2023
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Commits on Dec 15, 2023

  1. Merge pull request #88 from SouthGreenPlatform/master 

    Merge from master
    @GuilhemSempere
    GuilhemSempere committed Dec 15, 2023
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  2. Implementing discriminate on multiple groups

    @GuilhemSempere
    GuilhemSempere committed Dec 15, 2023
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Commits on Dec 18, 2023

  1. Minor change

    @GuilhemSempere
    GuilhemSempere committed Dec 18, 2023
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  2. Fixed bookmark reload with multiple discriminate

    @GuilhemSempere
    GuilhemSempere committed Dec 18, 2023
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  3. Merge pull request #89 from SouthGreenPlatform/multipleGroups 

    Multiple groups
    @GuilhemSempere
    GuilhemSempere committed Dec 18, 2023
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  4. Fixed bookmark save & reload for gene-name and variant-id filters

    @GuilhemSempere
    GuilhemSempere committed Dec 18, 2023
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  5. Minor changes

    @GuilhemSempere
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Commits on Dec 19, 2023

  1. Reorganized JSP structure to avoid duplicate AppConfig bean declaration

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  2. Changed POM version

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  3. POM update

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  1. Version update

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  2. Updated documentation

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  3. Merge pull request #92 from SouthGreenPlatform/master 

    Merge from master
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Commits on Dec 21, 2023

  1. Merge remote-tracking branch 'origin/master' into individualMetadata

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  2. Merge pull request #95 from SouthGreenPlatform/individualMetadata 

    Filter individual metadata from server queries
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    GuilhemSempere committed Dec 21, 2023
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  3. Slight bugfix

    @GuilhemSempere
    GuilhemSempere committed Dec 21, 2023
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  4. Merge pull request #96 from SouthGreenPlatform/master 

    Merge from master
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  1. Back to default

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Commits on Jan 3, 2024

  1. Sorted out filtering individuals by metadata

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  1. Merge pull request #98 from SouthGreenPlatform/master 

    Merge from master
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  2. Bundle creation script version update

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Commits on Jan 5, 2024

  1. Merge pull request #99 from SouthGreenPlatform/bundles 

    Added bundle creation scripts for each OS
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  2. Mentioned customHomepageParagraph property in documentation

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Commits on Jan 6, 2024

  1. Solved issues with individuals' selection for IGV display

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Commits on Jan 10, 2024

  1. Minor fix

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Commits on Jan 11, 2024

  1. Fixed 2 bugs in chart interface... 

    - passing assembly to server
- showing metadata field checkboxes even if no group selected
    @GuilhemSempere
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Commits on Jan 17, 2024

  1. Last adjustments for 2.7-RELEASE

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  2. Minor fix

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Commits on Jan 19, 2024

  1. Improved metadata load interface

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Commits on Jan 23, 2024

  1. Update build.yml

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  2. Update build.yml

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  3. Update build.yml

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  4. Update build.yml

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  5. Update build.yml

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  6. Update build.yml

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  8. Update build.yml

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  9. Update build.yml

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  10. Update build.yml

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  11. Update build.yml

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  12. Update build.yml

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  13. Update build.yml

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  14. Update build.yml

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  15. Update build.yml

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  16. Update build.yml

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  17. Update build.yml

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  18. Update build.yml

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  19. Update build.yml

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Commits on Jan 24, 2024

  1. Update build.yml

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  2. Update build.yml

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  3. Minor change

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Commits on Jan 25, 2024

  1. Switched back to mongo:4.2.24 image as 4.2.25 not yet on dockerhub

    @GuilhemSempere
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  2. Update build.yml

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  3. Finalized build.yml for 2.7-RELEASE

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  4. Minor fix

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    GuilhemSempere committed Jan 25, 2024
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Commits on Feb 13, 2024

  1. Added support for SNPCLUST_EDITOR role

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    GuilhemSempere committed Feb 13, 2024
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Commits on Feb 29, 2024

  1. Update web.xml 

    extend timeout session
    @mrouard
    mrouard committed Feb 29, 2024
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Commits on Mar 5, 2024

  1. Added snpclust logo

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Commits on Mar 15, 2024

  1. Set session duration to 2 hours

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  2. Fixed bug in ignored metadata columns (all after first were shifted)

    @GuilhemSempere
    GuilhemSempere committed Mar 15, 2024
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Commits on Mar 20, 2024

  1. SnpClust link functionality almost finalized

    @GuilhemSempere
    GuilhemSempere committed Mar 20, 2024
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Commits on Mar 21, 2024

  1. Update index.jsp 

    Removed iframe-dialog resizing code that seems useless
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Commits on Mar 26, 2024

  1. Small bugfix

    @GuilhemSempere
    GuilhemSempere committed Mar 26, 2024
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  2. Now get list of list of level1Roles from moduleManager 

    (so it can customize it)
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  3. Merge remote-tracking branch 'origin/snpclust'

    @GuilhemSempere
    GuilhemSempere committed Mar 26, 2024
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  4. Simplified areGroupsOverlapping() implementation

    @GuilhemSempere
    GuilhemSempere committed Mar 26, 2024
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  5. Gave more flexibility in designing Fst groups

    @GuilhemSempere
    GuilhemSempere committed Mar 26, 2024
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Commits on Mar 27, 2024

  1. Fixed bug in areGroupsOverlapping()

    @GuilhemSempere
    GuilhemSempere committed Mar 27, 2024
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  2. Simplified chart query payload

    @GuilhemSempere
    GuilhemSempere committed Mar 27, 2024
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Commits on Mar 31, 2024

  1. Minor fix

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    GuilhemSempere committed Mar 31, 2024
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Commits on Apr 2, 2024

  1. Added means to display MAF distribution chart

    @GuilhemSempere
    GuilhemSempere committed Apr 2, 2024
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Commits on Apr 3, 2024

  1. Moved standalone IGV download link to "Online output tools" dialog

    @GuilhemSempere
    GuilhemSempere committed Apr 3, 2024
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  2. added OAuth token compatibility for API requests, based on an OIDC di… 

    …scovery file (#112)

Co-authored-by: GuilhemSempere <[email protected]>
    @BrapiCoordinatorSelby @GuilhemSempere
    BrapiCoordinatorSelby and GuilhemSempere committed Apr 3, 2024
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  3. Revert "added OAuth token compatibility for API requests, based on an… 

    … OIDC discovery file (#112)"

This reverts commit a899c7f.
    @GuilhemSempere
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  4. added OAuth token compatibility for API requests, based on an OIDC di… 

    …scovery file (#113)

Co-authored-by: Peter Selby <[email protected]>
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Commits on Apr 15, 2024

  1. Caching unzoomed results for fast zoom resets 

    ... also reduced dot size and set default number of intervals to 1000
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Commits on Apr 16, 2024

  1. add samples number in column "Projects"

    @dorian-grst
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  2. fix export box text overflow

    @dorian-grst
    dorian-grst committed Apr 16, 2024
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  3. add number of intervals in localstorage

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Commits on Apr 25, 2024

  1. update bundle-update script

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  2. add quick variant stats in variant details

    @dorian-grst
    dorian-grst committed Apr 25, 2024
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  3. Fixed dialog height (set to maximum for all)

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    GuilhemSempere committed Apr 25, 2024
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Commits on Apr 26, 2024

  1. add quick variant stats for any groups selected

    @dorian-grst
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Commits on Apr 30, 2024

  1. Dartimport (#121) 

    * test push master

* dartimport

* Better manage file type identification (+ slight improvements)

* Made DArTseq import support official (mentioned in UI)

* Merge from master (#115)

* Added support for SNPCLUST_EDITOR role

* Added snpclust logo

* SnpClust link functionality almost finalized

* Update index.jsp

Removed iframe-dialog resizing code that seems useless

* Small bugfix

* Now get list of list of level1Roles from moduleManager

(so it can customize it)

* Simplified areGroupsOverlapping() implementation

* Gave more flexibility in designing Fst groups

* Fixed bug in areGroupsOverlapping()

* Simplified chart query payload

* Minor fix

* Added means to display MAF distribution chart

* Moved standalone IGV download link to "Online output tools" dialog

* added OAuth token compatibility for API requests, based on an OIDC discovery file (#112)

Co-authored-by: GuilhemSempere <[email protected]>

* Revert "added OAuth token compatibility for API requests, based on an OIDC discovery file (#112)"

This reverts commit a899c7f.

---------

Co-authored-by: Peter Selby <[email protected]>

---------

Co-authored-by: Yoan BIGGIO <[email protected]>
Co-authored-by: Peter Selby <[email protected]>
    @GuilhemSempere @GaiaYuuki-dev @BrapiCoordinatorSelby
    3 people committed Apr 30, 2024
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  2. fix importing metadata from BrAPI to manage the case of having severa… 

    …l individuals or samples linked to the same externalRefId (#122)

Co-authored-by: Alice Boizet <[email protected]>
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    GuilhemSempere and aliceboizet committed Apr 30, 2024
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  3. Merge remote-tracking branch 'origin/bioversity-update' into staging

    @GuilhemSempere
    GuilhemSempere committed Apr 30, 2024
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Commits on May 2, 2024

  1. Added progress gif to let user wait

    @GuilhemSempere
    GuilhemSempere committed May 2, 2024
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  2. Fixed clearing of group contents when decreasing number of groups

    @GuilhemSempere
    GuilhemSempere committed May 2, 2024
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Commits on May 7, 2024

  1. By default display no genotypes in IGV.js

    @GuilhemSempere
    GuilhemSempere committed May 7, 2024
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Commits on May 14, 2024

  1. Merge branch 'master' of https://github.com/SouthGreenPlatform/Gigwa2… 

    ….git
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Commits on May 15, 2024

  1. Modified import UI to allow importing MD from single endpoint 

    ... accounting for the fact that provided IDs match those in the BrAPI
datasource. Started to handle new cases in the controller, still need to
implement the actual import
    @GuilhemSempere
    GuilhemSempere committed May 15, 2024
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Commits on May 16, 2024

  1. Getting there (direct BrAPI metadata import along with genotypes)

    @GuilhemSempere
    GuilhemSempere committed May 16, 2024
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Commits on May 17, 2024

  1. Finalized interface for direct BrAPI metadata import

    @GuilhemSempere
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  2. Finalized controller code for direct BrAPI metadata import

    @GuilhemSempere
    GuilhemSempere committed May 17, 2024
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  3. Minor change

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Commits on May 21, 2024

  1. Merge remote-tracking branch 'origin/directBrAPIMetadataImport' into 

    staging
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    GuilhemSempere committed May 21, 2024
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Commits on May 22, 2024

  1. feat(ci): build staging

    @dorian-grst @GuilhemSempere
    dorian-grst authored and GuilhemSempere committed May 22, 2024
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  2. Update build-staging.yml

    @GuilhemSempere
    GuilhemSempere committed May 22, 2024
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Commits on May 23, 2024

  1. Finalized quick variant stats

    @GuilhemSempere
    GuilhemSempere committed May 23, 2024
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  2. Re-added lost functionality (fast loading of IGV data without genotypes) 

    ... probably lost while resolving conflicts
    @GuilhemSempere
    GuilhemSempere committed May 23, 2024
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  3. Update build-staging.yml

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  4. Update build-staging.yml

    @GuilhemSempere
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  5. Update build-staging.yml

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  6. Update build-staging.yml

    @GuilhemSempere
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Commits on May 27, 2024

  1. Fixed missing data calculation

    @GuilhemSempere
    GuilhemSempere committed May 27, 2024
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Commits on Jun 14, 2024

  1. Fix/ci (#126) 

    updated staging CI
    @dorian-grst
    dorian-grst committed Jun 14, 2024
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  2. Minor change

    @GuilhemSempere
    GuilhemSempere committed Jun 14, 2024
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Commits on Jun 19, 2024

  1. Update pom.xml

    @GuilhemSempere
    GuilhemSempere committed Jun 19, 2024
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Commits on Jun 20, 2024

  1. Update pom.xml (#128) 

    Co-authored-by: GuilhemSempere <[email protected]>
    @dorian-grst @GuilhemSempere
    dorian-grst and GuilhemSempere committed Jun 20, 2024
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  2. Build update (#129) 

    added build-test for staging

---------

Co-authored-by: Dorian Grasset <[email protected]>
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    dorian-grst and dorian-grst committed Jun 20, 2024
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  3. Removed unused code

    @GuilhemSempere
    GuilhemSempere committed Jun 20, 2024
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  4. Added means to copy x-axis range to clipboard

    @GuilhemSempere
    GuilhemSempere committed Jun 20, 2024
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  5. Added means to paste position range from clipboard at once

    @GuilhemSempere
    GuilhemSempere committed Jun 20, 2024
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  6. trigger changed on build-test

    @dorian-grst
    dorian-grst committed Jun 20, 2024
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  7. added echo for debugging

    @dorian-grst
    dorian-grst committed Jun 20, 2024
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  8. added command in github ci

    @dorian-grst
    dorian-grst committed Jun 20, 2024
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  9. changed trigger on build-test ci

    @dorian-grst
    dorian-grst committed Jun 20, 2024
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  10. Implemented Zoom-out functionality

    @GuilhemSempere
    GuilhemSempere committed Jun 20, 2024
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  11. Merge branch 'staging' of https://github.com/SouthGreenPlatform/Gigwa… 

    …2.git into staging
    @GuilhemSempere
    GuilhemSempere committed Jun 20, 2024
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  12. Resolved import bugs created when adding support for direct MD pulling

    @GuilhemSempere
    GuilhemSempere committed Jun 20, 2024
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Commits on Jun 21, 2024

  1. Create MIT.txt (#130)

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  2. Update LICENSE.txt

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  3. Create AGPL-3.0.txt

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  4. Added means to create hashes in insecure context

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  5. Doc update

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  6. Merge branch 'master' of https://github.com/SouthGreenPlatform/Gigwa2… 

    ….git
    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  7. Removed useless files

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  8. Revert "added OAuth token compatibility for API requests, based on an 

    OIDC discovery file (#113)"
    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  9. Merge from master

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  10. Added an outline output tool

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  11. POM update

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  12. Fixed chart zoom-out feature

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  13. Fixed dependency version

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  14. Merge remote-tracking branch 'origin/staging'

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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  15. Minor UI change

    @GuilhemSempere
    GuilhemSempere committed Jun 21, 2024
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Commits on Jun 26, 2024

  1. Minor fix

    @GuilhemSempere
    GuilhemSempere committed Jun 26, 2024
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  2. Simplified individual selection

    @GuilhemSempere
    GuilhemSempere committed Jun 26, 2024
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  3. Re-added means to paste gene name list

    @GuilhemSempere
    GuilhemSempere committed Jun 26, 2024
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  4. Minor change

    @GuilhemSempere
    GuilhemSempere committed Jun 26, 2024
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  5. Updated FJ-Bytes to latest version

    @GuilhemSempere
    GuilhemSempere committed Jun 26, 2024
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Commits on Jun 28, 2024

  1. Provided means to (1) name individual groups, (2) select DB by taxon

    @GuilhemSempere
    GuilhemSempere committed Jun 28, 2024
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  2. Split up shared code from main.js into common.js

    @GuilhemSempere
    GuilhemSempere committed Jun 28, 2024
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Commits on Jul 2, 2024

  1. Merge pull request #132 from SouthGreenPlatform/master 

    Merge from master
    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  2. Set version number to 2.8-RELEASE

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  3. Merge pull request #133 from SouthGreenPlatform/staging 

    Merge from staging
    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  4. Final adjustments before release, documentation update

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  5. Merge pull request #134 from SouthGreenPlatform/staging 

    Final adjustments before release, documentation update
    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  6. Update build.yml

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  7. Merge pull request #135 from SouthGreenPlatform/GuilhemSempere-patch-3 

    Update build.yml
    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  8. Reverted back to original build.sh

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  9. Added missing file (possibly forgot to commmit/push it)

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  10. Added missing file (possibly forgot to commmit/push it) (#136)

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  11. Merge from master (#137) 

    * Update build.yml

* Reverted back to original build.sh

* Added missing file (possibly forgot to commmit/push it) (#136)
    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  12. Re-added lost methods

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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  13. Merge from staging

    @GuilhemSempere
    GuilhemSempere committed Jul 2, 2024
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Commits on Jul 25, 2024

  1. added python build file to get dynamically current pom.xml dependenci… 

    …es, add build.sh deprecated and improve current github workflow (#138)

Co-authored-by: Dorian Grasset <[email protected]>
    @GuilhemSempere @dorian-grst
    GuilhemSempere and dorian-grst committed Jul 25, 2024
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