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@UCSC-Treehouse

UCSC Treehouse Childhood Cancer Initiative

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  1. mend_qc mend_qc Public

    Count Mapped Exonic Non-Duplicate (MEND) reads in an RNA Seq bam file

    R 4

  2. pipelines pipelines Public

    Makefiles to run dockerized pipelines used in Treehouse on a single sample

    Makefile 3 6

  3. b2f_docker b2f_docker Public

    C++ 2

  4. CARE CARE Public

    Treehouse Comparative Analysis of RNA Expression

    Jupyter Notebook 2

  5. fusion-for-core fusion-for-core Public

    UCSC Treehouse Gene Fusion Analysis Pipeline

    Python 1 9

  6. hub hub Public

    Tooling to spin up and manage jupyter, nbviewer, xena for tertiary analyis

    Python 1 1

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