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@UMCUGenetics

UMCU Genetics

Repository for genetics code

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  1. RNASeq-NF RNASeq-NF Public

    RNASeq-NF is an NGS analysis pipeline for RNA expression quantification.

    Nextflow 7 8

  2. NF-IAP NF-IAP Public

    Illumina Analysis Pipeline in Nextflow

    Nextflow 2 5

  3. NextflowModules NextflowModules Public

    UMCU Genetics Nextflow modules

    Nextflow 25 10

Repositories

Showing 10 of 144 repositories
  • CustomModules Public
    UMCUGenetics/CustomModules’s past year of commit activity
    R 0 MIT 0 0 2 Updated Sep 6, 2024
  • DIMS Public

    Direct Infusion Mass Spectrometry pipeline

    UMCUGenetics/DIMS’s past year of commit activity
    R 2 MIT 2 11 0 Updated Sep 6, 2024
  • Dx_resources Public

    Resources used in diagnostics pipelines

    UMCUGenetics/Dx_resources’s past year of commit activity
    Python 3 MIT 0 15 2 Updated Sep 6, 2024
  • rnaseq-voila Public Forked from KlinGenErasmusMC/rnaseq-voila

    Jupyter Notebook / Voila App for analysis and filtering of RNA-Seq data for clinical genetics diagnostics

    UMCUGenetics/rnaseq-voila’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Sep 4, 2024
  • NanoRCS Public

    NanoRCS: Multimodal genome-wide cfDNA sequencing and analysis

    UMCUGenetics/NanoRCS’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Aug 30, 2024
  • clarity_epp Public

    Clarity LIMS epp scripts

    UMCUGenetics/clarity_epp’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 30, 2024
  • DxNextflowRNA Public
    UMCUGenetics/DxNextflowRNA’s past year of commit activity
    R 0 0 0 3 Updated Aug 29, 2024
  • DxNextflowWES Public

    Genome Diagnostics Nextflow WES workflow

    UMCUGenetics/DxNextflowWES’s past year of commit activity
    Nextflow 6 MIT 1 6 0 Updated Aug 28, 2024
  • NextflowModules Public

    UMCU Genetics Nextflow modules

    UMCUGenetics/NextflowModules’s past year of commit activity
    Nextflow 25 MIT 10 0 3 Updated Aug 26, 2024
  • mutSigExtractor Public

    An R package for extracting mutational signatures from vcf files

    UMCUGenetics/mutSigExtractor’s past year of commit activity
    R 9 GPL-3.0 6 4 0 Updated Aug 26, 2024
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