Slicer Brats Preprocessor is the wrapper for performing the preprocessing steps of the brattoolkit. The brats-toolkit will be installed automatically with the first use of the module.
For installing the docker installation follow the steps on https://github.com/UWA-Medical-Physics/SlicerBatchBrainMRTumorSegmentation.
Slicer scriptedcli module for brats preprocessor steps. Following the GUI for the brats preprocessor.
The inputs are:
The outputs from the brats preprocessor are the following folders.
The outputs from the first folder are used to perform further processing in the pipeline. The segmentation of the pre-processed data. For segmenting the above acquired preprocessed data, use the SlicerBratsSegmentator module. https://github.com/UWA-Medical-Physics/SlicerBratsSegmentator