hmer ondel must have mon length

Ultimagen · Jun 25, 2023 · 7852871 · 7852871
1 parent 4590e4a
commit 7852871
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/...in/java/org/broadinstitute/hellbender/tools/walkers/annotator/flow/FlowAnnotatorBase.java b/...in/java/org/broadinstitute/hellbender/tools/walkers/annotator/flow/FlowAnnotatorBase.java
@@ -295,7 +295,7 @@ protected void isHmerIndel(final VariantContext vc, final LocalContext localCont
             if ( diffIndex < 0 ) {
                 continue;
             }
-            if ( Math.max(refKey[diffIndex], altKey[diffIndex]) == 0 ) {
+            if ( Math.min(refKey[diffIndex], altKey[diffIndex]) == 0 ) {
                 continue;
             }
 

diff --git a/...ava/org/broadinstitute/hellbender/tools/walkers/annotator/flow/FlowAnnotatorUnitTest.java b/...ava/org/broadinstitute/hellbender/tools/walkers/annotator/flow/FlowAnnotatorUnitTest.java
@@ -57,7 +57,7 @@ public Object[][] getTestData() {
                 {
                         // not hmer indel
                         "TATCT CA TTGACCAA", "C",
-                        "del", "1", "1", "A", "ATCTC", "TTGAC", "0.3", "NA", "non-h-indel"
+                        "del", "1", "0", "", "ATCTC", "TTGAC", "0.3", "NA", "non-h-indel"
                 },
                 {
                         // del hmer indel