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Fast k-ordered(optional) suffix array construction algorithm.

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WilliamHsieh/sexyBWT

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sexyBWT

  • boost is required
  • Intel tbb is required
  • google test is required for testing
  • compiler with C++20 support

Hybrid

pSAIS

Test

  • All the testing is writen in google test.
make test
./test

Run example

  • The input file is in fasta format.
make psais
./psais < {fasta_file}

radix_sort

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Fast k-ordered(optional) suffix array construction algorithm.

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