psubmit

Set of shell scripts to submit batch jobs on various HPC systems in a generalized way.

File psubmit.opt is expected to be filled in. See psubmit.opt.example for the ideas on creating your own files.

The command line options that add or override settings of psubmit.opt:

• -x -- print debug trace (rather verbose)
• -o psubmit_opt_file_name -- use an alternative file name for the options file
• -n NNODES -- mandatory parameter: number of cluster nodes
• -p PPN -- number of MPI ranks per node
• -t NTHREADS -- number of OpenMP threads per rank
• -e BINARY -- override the TARGET_BIN settings of psubmit.opt
• -a ARGS -- arguments (as a single string literal) to pass to BINARY
• -b preproc_script -- override the BEFORE setting of psubmit.opt
• -f postproc_script -- override the AFTER setting of psubmit.opt