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@abacus-gene

abacus-gene

computational genomics

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  1. paml paml Public

    PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, pr…

    C 106 19

  2. paml-tutorial paml-tutorial Public

    paml documentation and tutorials

    HTML 42 5

  3. hhsd hhsd Public

    HHSD is a python pipeline for hierarchical heuristic species delimitation using genomic sequence data under the multispecies coalescent model. It drives data analysis using the program bpp.

    Python 2

  4. genotypecall genotypecall Public

    C 1

  5. bpp3 bpp3 Public

    C 1 1

  6. bpp-msci-D-process-mcmc bpp-msci-D-process-mcmc Public

    C 1

Repositories

Showing 9 of 9 repositories
  • hhsd Public

    HHSD is a python pipeline for hierarchical heuristic species delimitation using genomic sequence data under the multispecies coalescent model. It drives data analysis using the program bpp.

    abacus-gene/hhsd’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jul 24, 2024
  • paml Public

    PAML is a program package for model fitting and phylogenetic tree reconstruction using DNA and protein sequence data. Please report only **technical issues** on this repository (e.g., compiling, programs abort or do not run at all, etc.). Problems with input data and general questions should be posted at https://groups.google.com/g/pamlsoftware?pli

    abacus-gene/paml’s past year of commit activity
    C 106 GPL-3.0 19 6 (1 issue needs help) 3 Updated May 8, 2024
  • fw Public
    abacus-gene/fw’s past year of commit activity
    C 0 GPL-3.0 0 1 0 Updated Feb 19, 2024
  • 3s Public
    abacus-gene/3s’s past year of commit activity
    C 0 GPL-3.0 0 0 0 Updated Jul 11, 2023
  • paml-tutorial Public

    paml documentation and tutorials

    abacus-gene/paml-tutorial’s past year of commit activity
    HTML 42 GPL-3.0 5 0 0 Updated Jun 30, 2023
  • genotypecall Public
    abacus-gene/genotypecall’s past year of commit activity
    C 1 GPL-3.0 0 0 0 Updated Mar 23, 2023
  • bpp-subsample-data Public

    This program takes bpp sequence data file as input and samples sequences for 3 or 4 species

    abacus-gene/bpp-subsample-data’s past year of commit activity
    0 GPL-3.0 0 0 0 Updated Nov 26, 2022
  • bpp-msci-D-process-mcmc Public
    abacus-gene/bpp-msci-D-process-mcmc’s past year of commit activity
    C 1 GPL-3.0 0 0 0 Updated Apr 13, 2022
  • bpp3 Public
    abacus-gene/bpp3’s past year of commit activity
    C 1 GPL-3.0 1 0 0 Updated Jul 16, 2021

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