Skip to content
View acvill's full-sized avatar
🪗
🪗

Organizations

@britolab

Block or report acvill

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Please don't include any personal information such as legal names or email addresses. Maximum 100 characters, markdown supported. This note will be visible to only you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse

Pinned Loading

  1. CRISPRviewR CRISPRviewR Public

    an R package for repairing, comparing, and visualizing CRISPRs across environmental datasets

    R 1

  2. bracken_plot bracken_plot Public

    A Shiny app for taxonomic abundance visualization

    R 7 1

  3. nodeSeqs nodeSeqs Public

    Shell script for extracting sequences from high-degree nodes in metagenomic assembly graphs

    Shell

  4. findMotifs findMotifs Public

    R script for finding and scoring motifs in small genomes using position-frequency tables

    R 1

  5. Given a MSA and a list of motifs, ge... Given a MSA and a list of motifs, get position in each sequence where motifs are found.
    1
    msa_motifs <- function(msa, motifs) {
    2
      require(tibble)
    3
      require(Biostrings)
    4
      require(dplyr)
    5
      # read in fasta as Biostrings object
  6. given a nucleotide sequence, generat... given a nucleotide sequence, generate an index-color string recognized by forna
    1
    # requires the native pipe from R >= 4.1
    2
    ## maps each base to a particular color
    3
    ## colors can be named or hex values
    4
    ## outputs a format recognized by the forna webapp's custom color editor
    5
    ## http://rna.tbi.univie.ac.at/forna/forna.html