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Seurat v5.0.0

Test environments

  • local ubuntu 20.04 install, R 4.1.3
  • win-builder (oldrelease, release, devel)
  • mac-builder (release)

R CMD check results

There were no ERRORs or WARNINGs

There were two NOTEs

  • checking CRAN incoming feasibility ... NOTE Maintainer: 'Rahul Satija [email protected]'

New maintainer: Rahul Satija [email protected] Old maintainer(s): Paul Hoffman [email protected]

New maintainer is Rahul Satija, the email address has remained the same.

Suggests or Enhances not in mainstream repositories: BPCells, presto Availability using Additional_repositories specification: presto yes https://satijalab.r-universe.dev BPCells no ? ? ? https://bnprks.r-universe.dev Additional repositories with no packages: https://bnprks.r-universe.dev

Packages suggested but not available for checking: 'BPCells', 'presto'

BPCells and presto are hosted on R-universe and used conditionally in Seurat.

Downstream dependencies

The following reverse dependencies are impacted by this release of Seurat:

  • AnanseSeurat

    • Failure in examples and test because of changes in how default objects are created in Seurat.
    • Functionality impacted. The author was made aware of these changes: JGASmits/AnanseSeurat#34

  • CAMML

    • Failure in example because of changes in how default objects are created in Seurat.
    • Functionality impacted. The author was made aware of these changes over email

  • Canek

    • Failure in tests because of changes in how default objects are created in Seurat.
    • Functionality impacted. The author was made aware of these changes: MartinLoza/Canek#20

  • clustree:

    • Failure in tests because of changes in data accessor methods in Seurat.
    • Functionality impacted. The author was made aware of these changes: lazappi/clustree#93
    • Author has incorporated changes

  • CSCDRNA

    • Failure in tests because of changes in data accessor methods in Seurat.
    • Functionality impacted. The author was made aware of these changes: empiricalbayes/CSCDRNA#1

  • scCustomize

    • Failure in example because of changes in how default objects are created in Seurat.
    • Functionality impacted. The author was made aware of these changes: samuel-marsh/scCustomize#131

  • SCpubr:

    • Failure in example because of changes in how default objects are created in Seurat.
    • Functionality impacted. The author was made aware of these changes: enblacar/SCpubr#42

  • Signac

    • Faulure in new tests because of SeuratObject changing the order of the results, but not the actual values.
    • Functionality not impacted. The author was made aware of these changes over email and has made changes.

  • tidyseurat - Faulure in new tests because of SeuratObject changing the order of the results, but not the actual values. - Functionality not impacted. The author was made aware of these changes: stemangiola/tidyseurat#74

  • VAM

    • Failure in tests because of changes in data accessor methods in Seurat.
    • Functionality impacted. The author was made aware of these changes over email