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Releases: amarquand/PCNtoolkit

PCNtoolkit version 0.30

13 Jun 08:30
@amarquand amarquand
v0.30
7c6a3b3
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PCNtoolkit version 0.30 Latest
Latest

Minor release over 0.29

  • Added functionality for plotting centiles in HBR
  • Added support for SLURM (via normative_parallel)
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PCNtoolkit version 0.29

16 Dec 13:23
@amarquand amarquand
v0.29
6d9b7f3
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PCNtoolkit version 0.29
  • Bug fixes (e.g. HBR predict crash, normative_paralell support for .txt input)
  • Added docstrings for most functions
  • Fixed some problems with exception handling
  • Formatted whole project with autopep8
  • Addedd functionality to compute SHASH z-scores from normative.py
  • Updated requirements
  • Basic pytest continuous integration framework implemented
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PCNtoolkit version 0.28

09 Jun 10:49
@amarquand amarquand
v0.28
7734147
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PCNtoolkit version 0.28
  • Updated to PyMC5 (including migrating back-end to PyTensor)
  • Added support for longitudinal normative modelling with BLR (see Buckova-Rehak et al 2023)
  • Changed default optimiser for trend surface models (for scalability)
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PCNtoolkit version 0.27

06 Mar 12:51
@amarquand amarquand
v0.27
84e47ec
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PCNtoolkit version 0.27
  • Configured more sensible default options for HBR (random slope and intercept for mu and random intercept for sigma)
  • Fixed a translation problem between the previous naming convention for HBR models (only Gaussian models) and the current naming (also SHASH models)
  • Minor updates to fix synchronisation problems in PCNportal (related to the HBR updates above)
  • Added configuration files for containerisation with Docker
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PCNtoolkit version 0.26

02 Jan 11:31
@amarquand amarquand
v0.26
36b7ce9
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PCNtoolkit version 0.26
  • Multiple bug fixes, relating to imports, predict() and transfer() functions
  • Added support for web portal
  • Provided a wrapper for blr to use transfer() functionality
  • Also streamlined tutorials (PCNtoolkit-demo), so that all tutorials run with this version
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PCNtoolkit version 0.25

07 Aug 11:36
@amarquand amarquand
v0.25
6f79041
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PCNtoolkit version 0.25
  • Minor bug fixes related to imports
  • Minor bug fixes related to SHASH/HBR
  • Minor bug fix in normative.py (affecting SMSE)
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PCNtoolkit version 0.24

15 Jun 12:12
@amarquand amarquand
v0.24
5ed8d23
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PCNtoolkit version 0.24

Only minor changes (functionally virtually equivalent to version 0.23)

  • Minor bug fix related to SHASH/HBR
  • Added change log
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PCNtoolkit version 0.23

15 Jun 12:00
@amarquand amarquand
v0.23
4148fbc
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PCNtoolkit version 0.23

Changes:

  • SHASH functionality for HBR added
  • Bug fix for normative model predict() function
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PCNtoolkit version 0.22

23 Feb 11:16
@amarquand amarquand
v0.22
edff361
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PCNtoolkit version 0.22

Some minor updates and bug fixes:

  • updates to documentation and tutorials
  • updates to normative_parallel (interactive usage)
  • updates to HBR (merge functionality)
  • other minor bug fixes related to cross-validation (computation of error metrics), import problems and calibration statistics
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PCNtoolkit version 0.21

05 Nov 13:41
@amarquand amarquand
v0.21
57456b5
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PCNtoolkit version 0.21

Relatively minor updates with respect to version 0.20, including:

  • documentation updates
  • minor updates to warp (including bug fix for the compostition)
  • software version is saved in models
  • utility functions for calibration descriptives and extreme values
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