revert to the original way isize_flag is calculated

andersen-lab · Jan 24, 2023 · 75eb684 · 75eb684
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commit 75eb684
Showing 1 changed file with 0 additions and 1 deletion.
diff --git a/src/trim_primer_quality.cpp b/src/trim_primer_quality.cpp
@@ -584,7 +584,6 @@ int trim_bam_qual_primer(std::string bam, std::string bed, std::string bam_out,
     //isize is insert size
     //l_qseq is the query length 
     isize_flag = (abs(aln->core.isize) - max_primer_len) > abs(aln->core.l_qseq);
-    isize_flag = (abs(aln->core.isize) - max_primer_len) > 0;
     // if reverse strand
     if((aln->core.flag&BAM_FPAIRED) != 0 && isize_flag){ // If paired
     get_overlapping_primers(aln, primers, overlapping_primers);