Codon numbering

[AKWB]

I am using IVar for SARS-CoV-2 analysis and it would be really helpful to get in the variants output not only the genomic coordinates, but also the number for the codon affected if there is a aminoacid exchange. Would it be possible to add this feature?

Best,
AKWB

[AlaaALatif]

Yea, that would be useful to add. Will explore adding it soon. Thank you!

Al

[AKWB]

Hi,

sorry to bother...any updates on that feature? I don't know how complicated it is, but it would make my life extremly easier and would accelate our workflows pretty strong. Otherwise I will need to set up now a final workaround for me ;-/.

Best,
AKWB

[gkarthik]

Hello AKWB,

Thank you for your patience. It isn't very complicated but unfortunately we are tied up with other COVID19 things at the moment. We will probably be able to add this feature within the next 2 weeks. We will keep you updated.

Best,
Karthik

[AKWB]

Same for us ;-). Super busy with COVID. 2 weeks is already pretty good!!! Then I wait. Thanks!!!!!!!     Gesendet: Mittwoch, 25. November 2020 um 19:33 Uhr Von: "Karthik" <[email protected]> An: "andersen-lab/ivar" <[email protected]> Cc: "AKWB" <[email protected]>, "Author" <[email protected]> Betreff: Re: [andersen-lab/ivar] Codon numbering (#78)   Hello AKWB, Thank you for your patience. It isn't very complicated but unfortunately we are tied up with other COVID19 things at the moment. We will probably be able to add this feature within the next 2 weeks. We will keep you updated. Best, Karthik — You are receiving this because you authored the thread. Reply to this email directly, view it on GitHub, or unsubscribe.

[AKWB]

Hey Karthik,

any news on the codon numbering ;-)?

Greets,
Anke

[cmaceves]

addressed by PR #127