Merge pull request #13 from andreped/dev

Fixed orientiation in 2D renderer
andreped · Jun 7, 2023 · 808d93e · 808d93e
2 parents 66e8034 + ca94437
commit 808d93e
Showing 1 changed file with 4 additions and 2 deletions.
diff --git a/neukit/utils.py b/neukit/utils.py
@@ -9,7 +9,8 @@ def load_ct_to_numpy(data_path):
         data_path = data_path.name
 
     image = nib.load(data_path)
-    data = image.get_fdata()
+    resampled = resample_to_output(image, None, order=0)
+    data = resampled.get_fdata()
 
     data = np.rot90(data, k=1, axes=(0, 1))
 
@@ -29,7 +30,8 @@ def load_pred_volume_to_numpy(data_path):
         data_path = data_path.name
 
     image = nib.load(data_path)
-    data = image.get_fdata()
+    resampled = resample_to_output(image, None, order=0)
+    data = resampled.get_fdata()
 
     data = np.rot90(data, k=1, axes=(0, 1))