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[schema] Updating the datasources schema #5451

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john-bodley
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@john-bodley john-bodley commented Jul 20, 2018

We've noticed a number of anomalies in our database caused by ill-defined forms and/or table schema definitions. This PR ensures that the datasources.datasource_name column is non-NULL.

Note this migration will fail if the datasource_name column is NULL. One must manually fix these records as programmatically trying to remedy these invalid records is difficult as the intent is unclear and the tables may function (from a query standpoint) if SQL is provided. The following query determines which records are problematic:

SELECT 
    *
FROM 
   datasources
WHERE 
   datasource_name IS NULL

Note this PR is gated by #5445 and #7084 which ensure that empty strings associated with form-data wont persist in the database and is necessary for ensuring that the relevant entries are non-NULL.

to: @fabianmenges @graceguo-supercat @michellethomas @mistercrunch @timifasubaa

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codecov-io commented Jul 20, 2018

Codecov Report

Merging #5451 into master will decrease coverage by <.01%.
The diff coverage is 100%.

Impacted file tree graph

@@            Coverage Diff             @@
##           master    #5451      +/-   ##
==========================================
- Coverage   64.91%   64.91%   -0.01%     
==========================================
  Files         428      428              
  Lines       20946    20945       -1     
  Branches     2330     2330              
==========================================
- Hits        13597    13596       -1     
  Misses       7225     7225              
  Partials      124      124
Impacted Files Coverage Δ
superset/connectors/druid/models.py 82.49% <100%> (-0.03%) ⬇️

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@@ -475,7 +475,6 @@ class DruidDatasource(Model, BaseDatasource):
security_manager.user_model,
backref=backref('datasources', cascade='all, delete-orphan'),
foreign_keys=[user_id])
UniqueConstraint('cluster_name', 'datasource_name')
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Note this is a duplicate as it’s defined above.

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LGTM

@john-bodley
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john-bodley commented Jul 22, 2018

@mistercrunch I think these series of PRs are gated by #5445 which coerces empty strings to NULL (and prevents them from reappearing the in database) given that this PR enforces that the datasource_source is non-NULL.

@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch from 9b6752b to 3a0867e Compare August 15, 2018 15:40
@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch 2 times, most recently from 0721cb7 to db6469b Compare October 2, 2018 04:49
@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch 2 times, most recently from d07e8c6 to 4a81903 Compare March 22, 2019 19:10
@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch from 4a81903 to a08e676 Compare March 22, 2019 20:29
@john-bodley john-bodley added the risk:db-migration PRs that require a DB migration label Mar 22, 2019
@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch from a08e676 to 98c0c0a Compare March 22, 2019 22:11
@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch 2 times, most recently from d93fe22 to d1c7b4d Compare April 23, 2019 19:23
@john-bodley john-bodley force-pushed the john-bodley-superset-update-datasources branch from d1c7b4d to c4e4eff Compare April 23, 2019 19:24
@john-bodley john-bodley merged commit 621cef7 into apache:master Apr 23, 2019
xtinec pushed a commit that referenced this pull request Apr 29, 2019
* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)
xtinec pushed a commit that referenced this pull request May 1, 2019
* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print
betodealmeida pushed a commit that referenced this pull request May 3, 2019
* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing
betodealmeida pushed a commit that referenced this pull request May 3, 2019
* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* Workaround for no results returned (#7442)

* feat: view presto row objects in data grid (#7436)

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* feat: Scheduling queries from SQL Lab (#7416)

* Lightweight pipelines POC

* Add docs

* Minor fixes

* Remove Lyft URL

* Use enum

* Minor fix

* Fix unit tests

* Mark props as required
xtinec pushed a commit that referenced this pull request May 10, 2019
* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* Added living goods as among the users of Superset (#7407)

* Added living goods as among the users of Superset

Living Goods is a non profit organisation with operation in africa and the middle east. We work in community health use data heavily on day to day. Superset is our platform of choice for dashboards.

* Update README.md

* [dashboard] allow user re-order top-level tabs (#7390)

* [SQL Lab] Increase timeout threshold for offline check (#7411)

* Bump FAB to 2.0.0 (#7323)

* Bump FAB to 2.0.0

* [tests] whitelist SecurityApi login and refresh endpoints

* [style] Fix, C812 missing trailing commas

* [security] Remove SUPERSET_UPDATE_PERMS flag

Registering sources needs to be performed after the views are
initialized on UPDATE_PERMS=False configuration

* [docs] New, FAB_UPDATE_PERMS and flask fab cli

* [docs] Fix, db upgrade needs to come first, create-admin needs a db

* [cli] New, superset init bootstraps all permissions for FAB and Superset

* [style] Fix, flakes

* [annotations] Improves UX on annotation validation, start_dttm, end_dttm (#7326)

* Setting renderTrigger on label_colors (#7410)

* Refactor out controlUtils.js module + unit tests (#7350)

* [WiP]refactor out a controlUtils.js file

* unit tests

* add missing license

* Addressing comments

* feature: see Presto row and array data types (#7413)

* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* Removed --console-log and superset runserver (#7421)

* Fixes dashboard export button missing download and #7353 (#7427)

* Added additional German translations to string file (#6604)

* Added additional German translations to string file

Updates to German translation files as per directions

* Removed messages.json

* [fix] Fixing SQL parsing issue (#7374)

* add chinese translate (#7402)

* Quick fix to address deadlock issue (#7434)

* feat: view presto row objects in data grid (#7445)

* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* feat: Scheduling queries from SQL Lab (#7416) (#7446)

* Merge lastest from master into lyft-release-sp8 (#7405)

* filter out all nan series (#7313)

* improve not rich tooltip (#7345)

* Create issue_label_bot.yaml (#7341)

* fix: do not save colors without a color scheme (#7347)

* [wtforms] Strip leading/trailing whitespace (#7084)

* [schema] Updating the datasources schema (#5451)

* limit tables/views returned if schema is not provided (#7358)

* limit tables/views returned if schema is not provided

* fix typo

* improve code performance

* handle the case when table name or view name does not present a schema

* Add type anno (#7342)

* Updated local dev instructions to include missing step

* First pass at type annotations

* [schema] Updating the base column schema (#5452)

* Update 937d04c16b64_update_datasources.py (#7361)

* Feature flag for client cache (#7348)

* Feature flag for client cache

* Fix integration test

* Revert "Fix integration test"

This reverts commit 58434ab.

* Feature flag for client cache

* Fix integration tests

* Add feature flag to config.py

* Add another feature check

* Fix more integration tests

* Fix raw HTML in SliceAdder (#7338)

* remove backendSync.json (#7331)

* [bubbles] issue when using duplicated metrics (#7087)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04 (#7359)

* SUPERSET-8: Update text in docs copyright footer (#7360)

* SUPERSET-7: Docker compose config version breaks on Ubuntu 16.04

* SUPERSET-8: Extra text in docs copyright footer

* [schema] Adding commits and removing unnecessary foreign-key definitions (#7371)

*  Store last selected dashboard in sessionStorage (#7181)

* Store last selected dashboard in sessionStorage

* Fix tests

* [schema] Updating the base metric schema (#5453)

* Fix NoneType bug & fill the test recipients with original recipients if empty (#7365)

* feat: see Presto row and array data types (#7391)

* feat: see Presto row and array data types

* fix: address PR comments

* fix: lint and build issues

* fix: add types

* Incorporate feedback from initial PR (prematurely merged to lyft-release-sp8) (#7415)

* add stronger type hints where possible

* fix: lint issues and add select_star func in Hive

* add missing pkg init

* fix: build issues

* fix: pylint issues

* fix: use logging instead of print

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* Workaround for no results returned (#7442)

* feat: view presto row objects in data grid (#7436)

* feat: view presto row objects in data grid

* fix: address feedback

* fix: spacing

* feat: Scheduling queries from SQL Lab (#7416)

* Lightweight pipelines POC

* Add docs

* Minor fixes

* Remove Lyft URL

* Use enum

* Minor fix

* Fix unit tests

* Mark props as required

* feat: Add `validate_sql_json` endpoint for checking that a given sql query is valid for the chosen database (#7422) (#7462)

merge from lyft-release-sp8 to master

* Adds missing metric sum__SP_RUR_TOTL (#7452)

* Late import for optional lib pyhive (#7471)

* Late import for optional lib pyhive

* fix

* fix: calendar heatmap examples (#7375)

Fixing a set of examples that trip on ValueError vs TypeError

* bugfix: Improve support for special characters in schema and table names (#7297)

* Bugfix to SQL Lab to support tables and schemas with characters that require quoting

* Remove debugging prints

* Add uri encoding to secondary tables call

* Quote schema names for presto

* Quote selected_schema on Snowflake, MySQL and Hive

* Remove redundant parens

* Add python unit tests

* Add js unit test

* Fix flake8 linting error

* [dashboard] After update filter, trigger new queries when charts are visible (#7233)

* trigger query when chart is visible

* add integration test

* fix: alter sql columns to long text #7463 (#7476)

Merge lyft-release-sp8@7bfe7bc to master

* Refactor ConsoleLog (#7428)

* Revised Chinese translation (#7464)

* add chinese translate

* edit chinese translation

* druid connector: avoid using 'dimensions' for scan queries (#7377)

After the following PyDruid change (contained in version 0.5.2)
the Superset Histogram charts rendered with Druid data are
broken:

druid-io/pydruid@0a59a70

Bump the pydruid requirements accordingly in setup.py

Issue: #7368
@etr2460 etr2460 mentioned this pull request Oct 2, 2019
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