Bump snakemake from 7.30.1 to 7.31.1

[dependabot]

Bumps snakemake from 7.30.1 to 7.31.1.

Release notes

Sourced from snakemake's releases.

v7.31.1

7.31.1 (2023-08-02)

Bug Fixes

• require python >=3.7 again (the python 3.9 dependency was unnecessary) (#2372) (0d0e9c4)

Documentation

• update CHANGELOG.md: add minimum Python version bump (#2370) (48e934d)

v7.31.0

7.31.0 (2023-07-26)

Features

• Add support for Google Service Accounts and GCE VM network configuration (#2318) (2b754aa)

v7.30.2

7.30.2 (2023-07-20)

Bug Fixes

• do not allow setting benchmark and between-workflow caching for the same rule. The reason is that when the result is taken from cache, there is no way to fill the benchmark file with any reasonable values. (#2335) (e2d64fa)
• ensure lazy evaluation of resource functions/callables (this also entails, for now, a removal of the thread statistics in the yellow job stats table); further, added some clarifying sentences about resource function evaluation to the docs (#2356) (4c591b7)
• handle non-PEP440 versions of apptainer/singulariy (#2337) (dea6ba8)
• remote GS builds too many inventories; io:collect_mtime always uses uncached mtime (#2266) (bad9115)
• Solve apptainer version issue (#2333) (a876e0f)
• SyntaxWarnings due to non-raw regex pattern strings (#2359) (a08c0b0)

Documentation

• clarify minimum Snakemake version for profiles (86dc277)
• clarify the channel priority in environment definition deployment.rst (#2352) (76aa964)
• fix typo (stackoverflow issue) (#2365) (f770984)
• note on using checkpoint mechanism only for input function, not for params or resources. (#2353) (4be2f9d)

Changelog

Sourced from snakemake's changelog.

7.31.1 (2023-08-02)

Bug Fixes

• require python >=3.7 again (the python 3.9 dependency was unnecessary) (#2372) (0d0e9c4)

Documentation

• update CHANGELOG.md: add minimum Python version bump (#2370) (48e934d)

7.31.0 (2023-07-26)

Features

• Add support for Google Service Accounts and GCE VM network configuration (#2318) (2b754aa)

7.30.2 (2023-07-20)

Breaking changes

• Bump minimum Python version from 3.7 to 3.9 (#2369) (4608163)

Bug Fixes

• do not allow setting benchmark and between-workflow caching for the same rule. The reason is that when the result is taken from cache, there is no way to fill the benchmark file with any reasonable values. (#2335) (e2d64fa)
• ensure lazy evaluation of resource functions/callables (this also entails, for now, a removal of the thread statistics in the yellow job stats table); further, added some clarifying sentences about resource function evaluation to the docs (#2356) (4c591b7)
• handle non-PEP440 versions of apptainer/singulariy (#2337) (dea6ba8)
• remote GS builds too many inventories; io:collect_mtime always uses uncached mtime (#2266) (bad9115)
• Solve apptainer version issue (#2333) (a876e0f)
• SyntaxWarnings due to non-raw regex pattern strings (#2359) (a08c0b0)

Documentation

• clarify minimum Snakemake version for profiles (86dc277)
• clarify the channel priority in environment definition deployment.rst (#2352) (76aa964)
• fix typo (stackoverflow issue) (#2365) (f770984)
• note on using checkpoint mechanism only for input function, not for params or resources. (#2353) (4be2f9d)

Commits

• 47a09bd chore(main): release 7.31.1 (#2382)
• 48e934d docs: update CHANGELOG.md: add minimum Python version bump (#2370)
• 0d0e9c4 fix: require python >=3.7 again (the python 3.9 dependency was unnecessary) (...
• 384d006 chore: use latest release of ansible roles for slurm setup (#2377)
• cfefdc1 chore: fix formatting
• 836fd2a chore(main): release 7.31.0 (#2371)
• 2b754aa feat: Add support for Google Service Accounts and GCE VM network configuratio...
• 2bf308c chore: Remove references to allows_directories (#2342)
• 9cfcd91 chore(main): release 7.30.2 (#2338)
• 4c591b7 fix: ensure lazy evaluation of resource functions/callables (this also entail...
• Additional commits viewable in compare view

Most Recent Ignore Conditions Applied to This Pull Request

Dependency Name	Ignore Conditions
snakemake	[>= 7.32.a, < 7.33]

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