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Process/protocol editing failure with missing unit
app: samplesheets
Issue in the samplesheets app
bug
Something isn't working
Include LDAP settings in admin_settings.rst
documentation
Improvements or additions to documentation
Cleanup and prepare v0.15.1
documentation
Improvements or additions to documentation
internal
Changes invisible to the user or APIs (e.g. refactoring and optimization)
Add unit tests for assay app plugins
app: samplesheets
Issue in the samplesheets app
internal
Changes invisible to the user or APIs (e.g. refactoring and optimization)
Update BAM/CRAM/VCF omit pattern defaults?
app: samplesheets
Issue in the samplesheets app
feature
Requested feature or enhancement
help wanted
Extra attention is needed
tbd
Comments wanted, spec/schedule/prioritization to be decided, etc.
#1979
opened Aug 8, 2024 by
mikkonie
Fix flake8 E721 complaints after Python upgrade
app: samplesheets
Issue in the samplesheets app
internal
Changes invisible to the user or APIs (e.g. refactoring and optimization)
Specify and document new method for dev installs
documentation
Improvements or additions to documentation
environment
Issues of dependencies, CI, deployment etc.
Add django-axes support
environment
Issues of dependencies, CI, deployment etc.
feature
Requested feature or enhancement
Make ontology term selector load spinner more visible
app: samplesheets
Issue in the samplesheets app
cosmetic
Cosmetic change, does not affect functionality
Stop logging project locked messages in timeline?
app: landingzones
Issue in the landingzones app
app: taskflowbackend
Issue in the taskflowbackend app
feature
Requested feature or enhancement
tbd
Comments wanted, spec/schedule/prioritization to be decided, etc.
#1970
opened Jul 31, 2024 by
mikkonie
Optimize landing zone creation with restrict collections enabled
app: landingzones
Issue in the landingzones app
feature
Requested feature or enhancement
#1969
opened Jul 25, 2024 by
mikkonie
Squash migrations for v1.0
app: landingzones
Issue in the landingzones app
app: ontologyaccess
Issue in the ontologyaccess app
app: samplesheets
Issue in the samplesheets app
feature
Requested feature or enhancement
Incorrect/invalid links in IGV setup documentation
bug
Something isn't working
documentation
Improvements or additions to documentation
help wanted
Extra attention is needed
#1964
opened Jul 17, 2024 by
mikkonie
Add update_row() results in study table cache
app: samplesheets
Issue in the samplesheets app
feature
Requested feature or enhancement
Python-irodsclient v2.x raises permission errors in BatchMoveDataObjectsTask
app: taskflowbackend
Issue in the taskflowbackend app
bug
Something isn't working
ongoing
Ongoing issue, needs observation or pending on other projects
#1955
opened Jun 25, 2024 by
mikkonie
Increase CharField length for samplesheets models
app: samplesheets
Issue in the samplesheets app
feature
Requested feature or enhancement
tbd
Comments wanted, spec/schedule/prioritization to be decided, etc.
#1942
opened Jun 3, 2024 by
mikkonie
Add opt-out settings for email notifications
app: landingzones
Issue in the landingzones app
app: samplesheets
Issue in the samplesheets app
feature
Requested feature or enhancement
Add support for multiple VCF files in germline IGV sessions
app: samplesheets
Issue in the samplesheets app
feature
Requested feature or enhancement
future
Ideas for the future, not in current milestones
tbd
Comments wanted, spec/schedule/prioritization to be decided, etc.
#1937
opened Apr 4, 2024 by
mikkonie
Update REST API versioning for SODAR Core v1.0
app: irodsinfo
Issue in the irodsinfo app
app: landingzones
Issue in the landingzones app
app: samplesheets
Issue in the samplesheets app
breaking
Breaking change, to be implemented and documented with care
feature
Requested feature or enhancement
Grant contributors and guests read access to all landing zones within project
app: landingzones
Issue in the landingzones app
app: taskflowbackend
Issue in the taskflowbackend app
feature
Requested feature or enhancement
Grant owners and delegates iRODS read/write access to contributor zones
app: landingzones
Issue in the landingzones app
app: taskflowbackend
Issue in the taskflowbackend app
feature
Requested feature or enhancement
IGV session merging opens a new session
app: samplesheets
Issue in the samplesheets app
bug
Something isn't working
environment
Issues of dependencies, CI, deployment etc.
help wanted
Extra attention is needed
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Updated in the last three days: updated:>2024-09-03.