Minor modifications Vignette secondary functions

biomodhub · Jan 23, 2024 · 2f2a5b3 · 2f2a5b3
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Showing 10 changed files with 45 additions and 51 deletions.
diff --git a/R/bm_PseudoAbsences.R b/R/bm_PseudoAbsences.R
@@ -129,14 +129,14 @@
 ##' myResp.PA.vect <- vect(cbind(myRespXY, myResp.PA), geom = c("X_WGS84","Y_WGS84"))
 ##' 
 ##' # random method
-##' PA.r <- bm_PseudoAbsences(resp.var = myResp.PA,
+##' PA.r <- bm_PseudoAbsences(resp.var = myResp.PA.vect,
 ##'                           expl.var = myExpl,
 ##'                           nb.rep = 4,
 ##'                           nb.absences = 1000,
 ##'                           strategy = 'random')
 ##' 
 ##' # disk method
-##' PA.d <- bm_PseudoAbsences(resp.var = myResp.PA,
+##' PA.d <- bm_PseudoAbsences(resp.var = myResp.PA.vect,
 ##'                           expl.var = myExpl,
 ##'                           nb.rep = 4,
 ##'                           nb.absences = 500,
@@ -145,7 +145,7 @@
 ##'                           dist.max = 35)
 ##' 
 ##' # SRE method
-##' PA.s <- bm_PseudoAbsences(resp.var = myResp.PA,
+##' PA.s <- bm_PseudoAbsences(resp.var = myResp.PA.vect,
 ##'                           expl.var = myExpl,
 ##'                           nb.rep = 4,
 ##'                           nb.absences = 1000,
@@ -156,7 +156,7 @@
 ##' myPAtable <- data.frame(PA1 = ifelse(myResp == 1, TRUE, FALSE),
 ##'                         PA2 = ifelse(myResp == 1, TRUE, FALSE))
 ##' for (i in 1:ncol(myPAtable)) myPAtable[sample(which(myPAtable[, i] == FALSE), 500), i] = TRUE
-##' PA.u <- bm_PseudoAbsences(resp.var = myResp.PA,
+##' PA.u <- bm_PseudoAbsences(resp.var = myResp.PA.vect,
 ##'                           expl.var = myExpl,
 ##'                           strategy = 'user.defined',
 ##'                           user.table = myPAtable)

diff --git a/docs/articles/examples_1_mainFunctions.html b/docs/articles/examples_1_mainFunctions.html
diff --git a/docs/articles/examples_2_secundaryFunctions.html b/docs/articles/examples_2_secundaryFunctions.html
diff --git a/docs/articles/vignette_dataPreparation.html b/docs/articles/vignette_dataPreparation.html
diff --git a/docs/reference/bm_PseudoAbsences.html b/docs/reference/bm_PseudoAbsences.html
diff --git a/docs/reference/bm_VariablesImportance.html b/docs/reference/bm_VariablesImportance.html
diff --git a/docs/reference/index.html b/docs/reference/index.html
diff --git a/man/bm_PseudoAbsences.Rd b/man/bm_PseudoAbsences.Rd
diff --git a/man/bm_VariablesImportance.Rd b/man/bm_VariablesImportance.Rd