Remove method = "GCV.Cp" from gam::gam model

biomodhub · Jan 26, 2024 · c4bf63d · c4bf63d
1 parent bf2fbd4
commit c4bf63d
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Showing 3 changed files with 6 additions and 4 deletions.
diff --git a/R/biomod2_classes_0.R b/R/biomod2_classes_0.R
@@ -121,8 +121,8 @@ setMethod('BIOMOD.options.default', signature(mod = 'character', typ = 'characte
                 type = typ,
                 package = pkg,
                 func = fun,
-                args.names = formalArgs(fun),
-                args.default = as.list(formals(fun))
+                args.names = eval(parse(text = paste0("formalArgs(", pkg, "::", fun, ")"))),
+                args.default = eval(parse(text = paste0("as.list(formals(", pkg, "::", fun, "))")))
               )
             } else {
               params.MAXENT = list(path_to_maxent.jar = getwd(),
@@ -428,9 +428,11 @@ setMethod('BIOMOD.options.dataset', signature(strategy = 'character'),
               argstmp[["x"]] = NULL
               argstmp[["y"]] = NULL
               argstmp$family = binomial(link = 'logit')
-              argstmp$method = "GCV.Cp"
               if (pkg == "gam") { argstmp$control = gam::gam.control() }
-              if (pkg == "mgcv") { argstmp$control = mgcv::gam.control() }
+              if (pkg == "mgcv") {
+                argstmp$method = "GCV.Cp"
+                argstmp$control = mgcv::gam.control()
+              }
             }
             if (mod == "GLM") {
               argstmp$family = binomial(link = 'logit')

diff --git a/R/sysdata.rda b/R/sysdata.rda
diff --git a/data/OptionsBigboss.rda b/data/OptionsBigboss.rda