Modified Intraneuronal Nanoparticle Tracking (MINT) is a Python script used to extract intraneuronal transport parameters from trajectories of optically active nanoparticles.
It relies on trackpy to extract trajectories from videos, from which transport parameters are then calculated and statistically tested.
It can reasonably be applied to videos of fluorophore-labelled organelles or similar experiments.
Please refer to the documentation for further information.
Install the latest version :
git clone https://github.com/biophotlumin/mint.git
cd mint
pip install .
You can then run MINT with :
mint -f <input_folder> -p <path/to/file> -l -e -s
-f, --folder : Path to raw data folder.
-p, --params : Path to config file (YAML or JSON).
-l, --locate : Run tracking.
-e, --extract : Extract transport parameters from trajectories.
-s, --stats : Run statistical analysis.