Build and Test GATK 4

Add haploid support to GnarlyGenotyper #2774

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Triggered via pull request July 12, 2023 16:04

ldgauthier

synchronize #7750

ldg_gnarlyForHaploids

Status Failure

Total duration 1h 32m 36s

Artifacts 8

gatk-tests.yml

on: pull_request

check if the environment has privileges

build and push gatk docker to artifacts

Validate script WDLs using womtools

Validate generated WDLs using womtools

Matrix: wdlTests

Matrix: test

Matrix: testOnDocker

Annotations

2 errors

Java 17.0.6+10 build and test integration

Process completed with exit code 1.

Java 17.0.6+10 test on docker integration

Process completed with exit code 1.

Artifacts

Produced during runtime

Name	Size
gatkDockerImage Expired	2.07 GB
test-results-17.0.6+10-cloud Expired	330 KB
test-results-17.0.6+10-integration Expired	4.4 MB
test-results-17.0.6+10-unit Expired	155 MB
test-results-docker-17.0.6+10-conda Expired	288 KB
test-results-docker-17.0.6+10-integration Expired	4.31 MB
test-results-docker-17.0.6+10-unit Expired	154 MB
test-results-docker-17.0.6+10-variantcalling Expired	12.3 MB