Make M2 haplotype and clustered events filters smarter about germline events #3852

Job	Run time
Validate generated WDLs using womtools	13m 35s
build and push gatk docker to artifacts	21m 49s
check if the environment has privileges	1s
Validate script WDLs using womtools	54s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	27m 34s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	31m 54s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 36s
WDL test RUN_M2_WDL on cromwell	17m 38s
WDL test RUN_CNN_WDL on cromwell	17m 52s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 56s
Java 17.0.6+10 build and test cloud	14m 2s
Java 17.0.6+10 build and test integration	32m 53s
Java 17.0.6+10 build and test unit	20m 17s
Java 17.0.6+10 test on docker integration	36m 0s
Java 17.0.6+10 test on docker unit	24m 20s
Java 17.0.6+10 test on docker variantcalling	34m 32s
Java 17.0.6+10 test on docker conda	32m 5s
	6h 4m 58s

Provide feedback