Make M2 haplotype and clustered events filters smarter about germline events #3945

Job	Run time
Validate script WDLs using womtools	53s
build and push gatk docker to artifacts	24m 37s
check if the environment has privileges	1s
Validate generated WDLs using womtools	13m 8s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	26m 28s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	30m 18s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 15s
WDL test RUN_M2_WDL on cromwell	17m 16s
WDL test RUN_CNN_WDL on cromwell	16m 40s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	14m 7s
Java 17.0.6+10 build and test cloud	14m 11s
Java 17.0.6+10 build and test integration	32m 8s
Java 17.0.6+10 build and test unit	22m 53s
Java 17.0.6+10 test on docker integration	36m 17s
Java 17.0.6+10 test on docker unit	23m 48s
Java 17.0.6+10 test on docker variantcalling	31m 53s
Java 17.0.6+10 test on docker conda	33m 29s
	6h 2m 22s

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