Mutect2 germline resource can have split multiallelic format #4196

Job	Run time
Validate generated WDLs using womtools	13m 18s
check if the environment has privileges	1s
build and push gatk docker to artifacts	24m 20s
Validate script WDLs using womtools	1m 15s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	28m 11s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	30m 37s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 38s
WDL test RUN_M2_WDL on cromwell	17m 17s
WDL test RUN_CNN_WDL on cromwell	16m 38s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	13m 28s
Java 17.0.6+10 build and test cloud	22m 0s
Java 17.0.6+10 build and test integration	32m 44s
Java 17.0.6+10 build and test unit	22m 44s
Java 17.0.6+10 test on docker integration	38m 3s
Java 17.0.6+10 test on docker unit	24m 45s
Java 17.0.6+10 test on docker variantcalling	30m 16s
Java 17.0.6+10 test on docker conda	32m 0s
	6h 13m 15s

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