Mutect2 germline resource can have split multiallelic format #4197

Job	Run time
Validate generated WDLs using womtools	13m 34s
build and push gatk docker to artifacts	25m 8s
check if the environment has privileges	1s
Validate script WDLs using womtools	1m 5s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	26m 35s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	30m 45s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	24m 14s
WDL test RUN_M2_WDL on cromwell	17m 44s
WDL test RUN_CNN_WDL on cromwell	17m 7s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 58s
Java 17.0.6+10 build and test cloud	16m 38s
Java 17.0.6+10 build and test integration	33m 28s
Java 17.0.6+10 build and test unit	20m 37s
Java 17.0.6+10 test on docker integration	37m 42s
Java 17.0.6+10 test on docker unit	22m 29s
Java 17.0.6+10 test on docker variantcalling	32m 12s
Java 17.0.6+10 test on docker conda	32m 7s
	6h 4m 24s

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