Added DeprecatedFeature tags to CNNScoreVariants, CNNVariantTrain, an…

…d CNNVariantWriteTensors.
broadinstitute · Jul 9, 2024 · 0470fde · 0470fde
1 parent 260f8fc
commit 0470fde
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diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNScoreVariants.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNScoreVariants.java
@@ -103,6 +103,7 @@
  *   -weights path/to/my_model_folder/2dmodel.hd5
  * </pre>
  */
+@DeprecatedFeature
 @DocumentedFeature
 @CommandLineProgramProperties(
         summary = CNNScoreVariants.USAGE_SUMMARY,

diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantTrain.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantTrain.java
@@ -57,6 +57,7 @@
         oneLineSummary = "Train a CNN model for filtering variants",
         programGroup = VariantFilteringProgramGroup.class
 )
+@DeprecatedFeature
 @DocumentedFeature
 @ExperimentalFeature
 public class CNNVariantTrain extends CommandLineProgram {

diff --git a/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java b/src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/CNNVariantWriteTensors.java
@@ -71,6 +71,7 @@
         oneLineSummary = "Write variant tensors for training a CNN to filter variants",
         programGroup = VariantFilteringProgramGroup.class
 )
+@DeprecatedFeature
 @DocumentedFeature
 @ExperimentalFeature
 public class CNNVariantWriteTensors extends CommandLineProgram {