flow assembly-collapse-hmer-size -> 20

broadinstitute · Nov 21, 2022 · 232a84f · 232a84f
1 parent 683849f
commit 232a84f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/...institute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerArgumentCollection.java b/...institute/hellbender/tools/walkers/haplotypecaller/HaplotypeCallerArgumentCollection.java
@@ -264,7 +264,7 @@ public enum FlowMode {
                 MIN_BASE_QUALITY_SCORE_SHORT_NAME, "0",
                 FILTER_ALLELES, "true",
                 FILTER_ALLELES_SOR_THRESHOLD, "3",
-                FLOW_ASSEMBLY_COLLAPSE_HMER_SIZE_LONG_NAME, "12",
+                FLOW_ASSEMBLY_COLLAPSE_HMER_SIZE_LONG_NAME, "20",
                 OVERRIDE_FRAGMENT_SOFTCLIP_CHECK_LONG_NAME, "true",
                 FlowBasedAlignmentArgumentCollection.FLOW_LIKELIHOOD_PARALLEL_THREADS_LONG_NAME, "2",
                 FlowBasedAlignmentArgumentCollection.FLOW_LIKELIHOOD_OPTIMIZED_COMP_LONG_NAME, "true",