some minor test fixes

broadinstitute · Mar 6, 2024 · a4a146c · a4a146c
1 parent 3353a1c
commit a4a146c
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diff --git a/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java b/src/test/java/org/broadinstitute/hellbender/tools/walkers/mutect/Mutect2IntegrationTest.java
@@ -528,7 +528,7 @@ public void testContaminationFilter() {
                 filteredVariants.get(10).stream().filter(vc -> vc.getFilters().contains(GATKVCFConstants.CONTAMINATION_FILTER_NAME)).count());
 
         final List<VariantContext> missedObviousVariantsAtTenPercent = filteredVariants.get(10).stream()
-                .filter(vc -> !vc.getFilters().contains(GATKVCFConstants.CONTAMINATION_FILTER_NAME))
+                .filter(vc -> !vc.isFiltered())
                 .filter(VariantContext::isBiallelic)
                 .filter(vc -> {
                     final int[] AD = vc.getGenotype(0).getAD();