site depth bug (#7910)

broadinstitute · Jun 22, 2022 · e81a361 · e81a361
1 parent 6170e83
commit e81a361
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Showing 2 changed files with 0 additions and 10 deletions.
diff --git a/src/main/java/org/broadinstitute/hellbender/utils/codecs/SiteDepthBCICodec.java b/src/main/java/org/broadinstitute/hellbender/utils/codecs/SiteDepthBCICodec.java
@@ -47,11 +47,6 @@ public Writer<SiteDepth> makeSink( final GATKPath path,
                                        final SAMSequenceDictionary dict,
                                        final List<String> sampleNames,
                                        final int compressionLevel ) {
-        if ( sampleNames.size() != 1 ) {
-            throw new UserException("SiteDepth records do not encode their sample, and must all " +
-                                    "refer to a single sample, but the list of sample names is of " +
-                                    "size=" + sampleNames.size());
-        }
         final String className = SiteDepth.class.getSimpleName();
         return new Writer<>(path,
                             new SVFeaturesHeader(className, SiteDepth.BCI_VERSION, dict, sampleNames),

diff --git a/src/main/java/org/broadinstitute/hellbender/utils/codecs/SiteDepthCodec.java b/src/main/java/org/broadinstitute/hellbender/utils/codecs/SiteDepthCodec.java
@@ -58,11 +58,6 @@ public FeatureOutputStream<SiteDepth> makeSink( final GATKPath path,
                                                     final SAMSequenceDictionary dict,
                                                     final List<String> sampleNames,
                                                     final int compressionLevel ) {
-        if ( sampleNames.size() != 1 ) {
-            throw new UserException("SiteDepth records do not encode their sample, and must all " +
-                    "refer to a single sample, but the list of sample names is of " +
-                    "size=" + sampleNames.size());
-        }
         return new FeatureOutputStream<>(path,
                 getTabixFormat(),
                 SiteDepthCodec::encode,