Update to latest Picard/HTSJDK and fix compilation

broadinstitute · Oct 11, 2022 · fd3f0a5 · fd3f0a5
1 parent 8b2281c
commit fd3f0a5
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Showing 2 changed files with 3 additions and 3 deletions.
diff --git a/build.gradle b/build.gradle
@@ -60,8 +60,8 @@ repositories {
     mavenLocal()
 }
 
-final htsjdkVersion = System.getProperty('htsjdk.version','3.0.0')
-final picardVersion = System.getProperty('picard.version','2.27.4')
+final htsjdkVersion = System.getProperty('htsjdk.version','3.0.1')
+final picardVersion = System.getProperty('picard.version','2.27.5')
 final barclayVersion = System.getProperty('barclay.version','4.0.2')
 final sparkVersion = System.getProperty('spark.version', '2.4.5')
 final scalaVersion = System.getProperty('scala.version', '2.11')

diff --git a/src/testUtils/java/org/broadinstitute/hellbender/testutils/testers/SamFileTester.java b/src/testUtils/java/org/broadinstitute/hellbender/testutils/testers/SamFileTester.java
@@ -95,7 +95,7 @@ public File getOutputDir() {
     }
 
     private void setOutputDir() {
-        this.outputDir = IOUtil.createTempDir(this.getClass().getSimpleName() + ".", ".tmp");
+        this.outputDir = IOUtil.createTempDir(this.getClass().getSimpleName() + ".tmp").toFile();
         if (deleteOnExit) {
             outputDir.deleteOnExit();
         }