Moving and testing ingest scripts from variantstore #6881
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| cpu: 2 | ||
| } | ||
| output { | ||
| File metadata_tsv = glob("sample_*.tsv")[0] |
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i changed the name of the file from metadata_.tsv to sample_.tsv. it might make it more clear to update this output param. (if you do, also change it in the inputs to LoadArrays)
| Int table_id | ||
| File raw_schema | ||
| File sample_list_schema | ||
| String load = "false" |
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is false the right default?
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I'll change it to true.
| LOAD=true | ||
| else | ||
| LOAD=false | ||
| fi |
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when do you not want to load?
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My thought was that if we end up using Google Data Transfer we need a script that will create the tables but not actually load the data. Ideally we'd add the generation of the Transfers to this script too, but I didn't get around to doing that.
Now that I look at this though, I think the code for this script is all contained within the WDL and I shouldn't have committed this extra file. I'll add a comment about the Google Data Transfer to the WDL and delete this bash script.
* Copying files over from variantstore * some changes * forgot to turn the test back on * fixing test * addressing comments
* Copying files over from variantstore * some changes * forgot to turn the test back on * fixing test * addressing comments
* Copying files over from variantstore * some changes * forgot to turn the test back on * fixing test * addressing comments
* Copying files over from variantstore * some changes * forgot to turn the test back on * fixing test * addressing comments
* Copying files over from variantstore * some changes * forgot to turn the test back on * fixing test * addressing comments
* Copying files over from variantstore * some changes * forgot to turn the test back on * fixing test * addressing comments
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