support for non-AS called data #6975
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meganshand
approved these changes
Nov 20, 2020
| out = "|" + outNotAlleleSpecific + ",1|"; | ||
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| } else if (variant.getAlleles().size() == 4) { // GT 1/2 | ||
| // TODO: just replicate rather than distribute, is this right? |
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I think this is close enough. I tended to distribute when I did this for other metrics, but I don't think it matters and we don't want half of a read in the output anyway :)
| if (out == null) { | ||
| // Try to use non-AS version | ||
| // TODO: it looks like the AS_RAW version also trims to a single decimal point?? | ||
| // e.g. MQRankSum=1.465 and turn it into |-0.511,1| |
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I'm confused here, how did 1.465 become -0.511?
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lol -- cut and paste!
kcibul
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Jan 29, 2021
* support for non-AS called data * fixed null case
kcibul
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Feb 1, 2021
* support for non-AS called data * fixed null case
Marianie-Simeon
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Feb 16, 2021
* support for non-AS called data * fixed null case
kcibul
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Mar 9, 2021
* support for non-AS called data * fixed null case
mmorgantaylor
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* support for non-AS called data * fixed null case
This was referenced Mar 17, 2023
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