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fixing bug in filtering on export from variantstore #6976

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merged 1 commit into from
Nov 24, 2020
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meganshand
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Fixing a bug I noticed while spot checking sites. We should eventually add some tests that check expected outputs, but I'll save that for another day. We were accidentally applying filters to alleles in the filtering table that didn't exist in the cohort that was pulled out. Now we're only looking at VQSLODs in the filter table for alleles that are present in the output VCF.

@meganshand meganshand requested review from kcibul and ahaessly and removed request for kcibul November 23, 2020 14:48
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Travis reported job failures from build 32247
Failures in the following jobs:

Test Type JDK Job ID Logs
conda openjdk8 32247.5 logs

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great catch!

@meganshand meganshand merged commit 9fe8416 into ah_var_store Nov 24, 2020
@meganshand meganshand deleted the ms_bug branch November 24, 2020 14:50
kcibul pushed a commit that referenced this pull request Jan 29, 2021
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mmorgantaylor pushed a commit that referenced this pull request Apr 6, 2021
This was referenced Mar 17, 2023
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3 participants