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Created AvroFileReader and sampleAvroFile #7174

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merged 1 commit into from
Mar 31, 2021

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Marianie-Simeon
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Addresses

https://github.com/broadinstitute/dsp-spec-ops/issues/246

Commit Summary

  • Created AvroFileReader
  • Created a sampleAvroFile
  • Update ExtractCohort and ExtractCohortEngine to accept a AvroFile

Testing:
Created a test for AvroFileReader

…CohortEngine

-Created AvroFileReader

Update ExtractCohort and ExtractCohortEngine to accept a AvroFile
Testing:
Created a test for AvroFileReader
@Marianie-Simeon Marianie-Simeon changed the base branch from master to ah_var_store March 31, 2021 15:08
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gatk-bot commented Mar 31, 2021

Travis reported job failures from build 33431
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud openjdk8 33431.1 logs
cloud openjdk11 33431.14 logs

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@kcibul kcibul left a comment

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lgtm!

@Marianie-Simeon Marianie-Simeon merged commit a9c1885 into ah_var_store Mar 31, 2021
@Marianie-Simeon Marianie-Simeon deleted the ms_AVRO_fileReader branch March 31, 2021 17:41
mmorgantaylor pushed a commit that referenced this pull request Apr 6, 2021
…CohortEngine (#7174)

-Created AvroFileReader

Update ExtractCohort and ExtractCohortEngine to accept a AvroFile
Testing:
Created a test for AvroFileReader

Co-authored-by: Marianie-Simeon <[email protected]>
This was referenced Mar 17, 2023
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3 participants