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add option for create filter set to use sample_info with is_loaded #7434

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merged 25 commits into from
Aug 27, 2021

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ahaessly
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@ahaessly ahaessly commented Aug 23, 2021

Add ability to use the is_loaded column to get the samples for training.
log job id
break up vet to vet_new queries
VS-165
VS-166
VS-167

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Travis reported job failures from build 35656
Failures in the following jobs:

Test Type JDK Job ID Logs
integration openjdk11 35656.12 logs

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Travis reported job failures from build 35662
Failures in the following jobs:

Test Type JDK Job ID Logs
integration openjdk11 35662.12 logs

.dockstore.yml Outdated
@@ -92,6 +92,7 @@ workflows:
branches:
- master
- ah_var_store
- ah_use_is_loaded
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dont forget to remove me!

@@ -63,7 +66,7 @@ task PrepareCallsetTask {

input {
String destination_cohort_table_prefix
File sample_names_to_extract
File? sample_names_to_extract
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if there is no file, does it extract everything?

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if you don't supply a file it will extract everything where is_loaded is true

}
}

# if (defined(sample_names_to_extract)) {
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is this all for testing / still needed?

@ahaessly ahaessly merged commit 0cc1f8c into ah_var_store Aug 27, 2021
@ahaessly ahaessly deleted the ah_use_is_loaded branch August 27, 2021 22:08
This was referenced Mar 17, 2023
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3 participants