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Add task to ExtractCallset that verifies filter_set_name exists in GVS dataset [VS-335] #7734

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merged 8 commits into from
Mar 23, 2022

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rsasch
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@rsasch rsasch commented Mar 22, 2022

@rsasch rsasch changed the base branch from master to ah_var_store March 22, 2022 17:42
@rsasch rsasch changed the title Add task to ExtractCallset that verifies filter_set_name exists [VS-337] Add task to ExtractCallset that verifies filter_set_name exists in GVS dataset [VS-337] Mar 22, 2022
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gatk-bot commented Mar 22, 2022

Travis reported job failures from build 38203
Failures in the following jobs:

Test Type JDK Job ID Logs
integration openjdk11 38203.12 logs
integration openjdk8 38203.2 logs

exit 1
fi
>>>
output {
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awesome---would we ever want to re-use this code as a validation before we make the filter model to make sure the filter name doesn't already exist ?

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I'm hesitant to add more validation than was requested by users into individual WDLs because, I think it makes more sense, once we have one WDL to rule them all, to have an all-in-one validation step that sanity checks all the inputs before running.

@rsasch rsasch changed the title Add task to ExtractCallset that verifies filter_set_name exists in GVS dataset [VS-337] Add task to ExtractCallset that verifies filter_set_name exists in GVS dataset [VS-335] Mar 23, 2022
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gatk-bot commented Mar 23, 2022

Travis reported job failures from build 38225
Failures in the following jobs:

Test Type JDK Job ID Logs
integration openjdk11 38225.12 logs
integration openjdk8 38225.2 logs

@rsasch rsasch merged commit f4973c7 into ah_var_store Mar 23, 2022
@rsasch rsasch deleted the rsa_validate_filterset branch March 23, 2022 20:54
This was referenced Mar 17, 2023
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3 participants