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Replace Travis with GithubActions #7754

Merged
merged 37 commits into from
Apr 21, 2022
Merged

Replace Travis with GithubActions #7754

merged 37 commits into from
Apr 21, 2022

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jamesemery
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@jamesemery jamesemery commented Apr 4, 2022

We are trying to replace travis CI and we must test that the push tests work as expected. This will eventually require we rebase everything.

We should get rid of/update our old travis tickets

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codecov bot commented Apr 4, 2022

Codecov Report

Merging #7754 (16ed025) into master (c6eb337) will increase coverage by 68.298%.
The diff coverage is 79.692%.

@@               Coverage Diff                @@
##              master     #7754        +/-   ##
================================================
+ Coverage     18.644%   86.942%   +68.298%     
- Complexity      4635     36866     +32231     
================================================
  Files           1261      2211       +950     
  Lines          73745    173376     +99631     
  Branches       11768     18709      +6941     
================================================
+ Hits           13749    150736    +136987     
+ Misses         57944     16056     -41888     
- Partials        2052      6584      +4532     
Impacted Files Coverage Δ
...ine/GATKPlugin/GATKAnnotationPluginDescriptor.java 83.851% <ø> (+46.584%) ⬆️
...ine/GATKPlugin/GATKReadFilterPluginDescriptor.java 84.615% <ø> (+32.308%) ⬆️
...nder/cmdline/PicardCommandLineProgramExecutor.java 63.636% <0.000%> (+63.636%) ⬆️
...e/argumentcollections/DbsnpArgumentCollection.java 100.000% <ø> (ø)
...llections/MultiVariantInputArgumentCollection.java 100.000% <ø> (+100.000%) ⬆️
...broadinstitute/hellbender/engine/FeatureCache.java 92.157% <ø> (+19.608%) ⬆️
...oadinstitute/hellbender/engine/FeatureContext.java 81.818% <ø> (+72.727%) ⬆️
...org/broadinstitute/hellbender/engine/GATKTool.java 90.041% <ø> (+21.457%) ⬆️
...oadinstitute/hellbender/engine/IntervalWalker.java 88.889% <ø> (+88.889%) ⬆️
.../broadinstitute/hellbender/engine/LocusWalker.java 93.182% <ø> (+93.182%) ⬆️
... and 2310 more

@broadinstitute broadinstitute deleted a comment from gatk-bot Apr 6, 2022
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gatk-bot commented Apr 8, 2022

Github actions tests reported job failures from actions build 2116815019
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 8 2116815019.0 logs
cloud 11 2116815019.1 logs

@jamesemery jamesemery changed the title [DO NOT MERGE]Testing push features for Github Actions CI Replace Travis with GithubActions Apr 8, 2022
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@jamesemery
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@lbergelson I think this is done? I have gotten rid of most of the references to travis left in the repo and this Appears to be working. I have left in a broken test to demonstrate that hte warning script works.

@broadinstitute broadinstitute deleted a comment from gatk-bot Apr 11, 2022
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gatk-bot commented Apr 11, 2022

Github actions tests reported job failures from actions build 2149330287
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 8 2149330287.0 logs
cloud 11 2149330287.1 logs

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gatk-bot commented Apr 21, 2022

Github actions tests reported job failures from actions build 2202312023
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 11 2202312023.11 logs
cloud 8 2202312023.10 logs
unit 11 2202312023.13 logs
integration 11 2202312023.12 logs

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gatk-bot commented Apr 21, 2022

Github actions tests reported job failures from actions build 2202472504
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 11 2202472504.11 logs
cloud 8 2202472504.10 logs
unit 11 2202472504.13 logs
integration 11 2202472504.12 logs

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gatk-bot commented Apr 21, 2022

Github actions tests reported job failures from actions build 2202635208
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 8 2202635208.10 logs
cloud 11 2202635208.11 logs
unit 11 2202635208.13 logs
integration 11 2202635208.12 logs

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Github actions tests reported job failures from actions build 2202761977
Failures in the following jobs:

Test Type JDK Job ID Logs
cloud 8 2202761977.10 logs

@jamesemery jamesemery merged commit b6a28d1 into master Apr 21, 2022
@jamesemery jamesemery deleted the lb_github_actions branch April 21, 2022 17:56
mcovarr pushed a commit that referenced this pull request Apr 25, 2022
* Switched over to using GithubActions for CI services and re-implemented our existing tests as github an actions workflow. Removed old Travis infrastructure and scripts.

Co-authored-by: Louis Bergelson <[email protected]>, James Emery <[email protected]>
mcovarr pushed a commit that referenced this pull request Apr 25, 2022
* Switched over to using GithubActions for CI services and re-implemented our existing tests as github an actions workflow. Removed old Travis infrastructure and scripts.

Co-authored-by: Louis Bergelson <[email protected]>, James Emery <[email protected]>
This was referenced Mar 17, 2023
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3 participants