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Update Readme.md to reflect switch from Travis. #7808

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merged 2 commits into from
Apr 25, 2022
Merged

Update Readme.md to reflect switch from Travis. #7808

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ab9b32c
updating our readme.md to reflect the new test suite
jamesemery Apr 25, 2022
3e9413e
new location
jamesemery Apr 25, 2022
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13 changes: 7 additions & 6 deletions README.md
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@@ -1,4 +1,4 @@
[![Build Status](https://travis-ci.com/broadinstitute/gatk.svg?branch=master)](https://travis-ci.com/broadinstitute/gatk)
[![Build Status](https://github.com/broadinstitute/gatk/actions/workflows/gatk-tests.yml/badge.svg?branch=master)](https://github.com/broadinstitute/gatk/actions/workflows/gatk-tests.yml)
[![Maven Central](https://img.shields.io/maven-central/v/org.broadinstitute/gatk.svg)](https://maven-badges.herokuapp.com/maven-central/org.broadinstitute/gatk)
[![License](https://img.shields.io/badge/License-Apache%202.0-blue.svg)](https://opensource.org/licenses/Apache-2.0)

Expand Down Expand Up @@ -423,12 +423,13 @@ echo "source <PATH_TO>/gatk-completion.sh" >> ~/.bashrc
* To run tests and compute coverage reports, run **`./gradlew jacocoTestReport`**. The report is then in `build/reports/jacoco/test/html/index.html`.
(IntelliJ has a good coverage tool that is preferable for development).

* We use [Travis-CI](https://travis-ci.org/broadinstitute/gatk) as our continuous integration provider.
* We use [Github Actions](https://github.com/broadinstitute/gatk/actions/workflows/gatk-tests.yml) as our continuous integration provider.

* Before merging any branch make sure that all required tests pass on travis.
* Every travis build will upload the test results to our GATK Google Cloud Storage bucket.
A link to the uploaded report will appear at the very bottom of the travis log.
* Before merging any branch make sure that all required tests pass on Github.
* Every Actions build will upload the test results to our GATK Google Cloud Storage bucket and a zipped artifact upload.
A link to the uploaded report will appear at the very bottom of the github actions log.
Look for the line that says `See the test report at`.
Test github actions test artifacts will not show up on the webpage until the entire test has concluded.
If TestNG itself crashes there will be no report generated.

* We use [Broad Jenkins](https://gatk-jenkins.broadinstitute.org/view/Performance/) for our long-running tests and performance tests.
Expand Down Expand Up @@ -568,7 +569,7 @@ be found in the `build/docs/wdlGen` folder.
* To generate WDL Wrappers and validate the resulting outputs, run `./gradlew gatkWDLGenValidation`.
Running this task requires a local [cromwell](https://github.com/broadinstitute/cromwell) installation, and environment
variables `CROMWELL_JAR` and `WOMTOOL_JAR` to be set to the full pathnames of the `cromwell` and `womtool` jar files.
If no local install is available, this task will run automatically on travis in a separate job whenever a PR is submitted.
If no local install is available, this task will run automatically on github actions in a separate job whenever a PR is submitted.

* WDL wrappers for each GATK release are published to the [gatk-tool-wdls](https://github.com/broadinstitute/gatk-tool-wdls) repository.
Only tools that have been annotated for WDL generation will show up there.
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