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Java 17 and Spark 3.3.0. #8035
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Java 17 and Spark 3.3.0. #8035
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128d947
Java 17/Spark 3.3.0.
cmnbroad 2b7c5ef
Move the --add-opens directives to the jar file.
cmnbroad 4cfe136
Fix bad dependency picked up in rebase.
cmnbroad fd811bb
Repair README.md.
cmnbroad 9e35381
changing non-Docker from 17 to 17.0.1+12
samuelklee 3493c71
Update ModelSegments expected results for Java 17.0.1+12.
cmnbroad d74c038
Update scala to fix DirectBuffer access issue.
cmnbroad 737f2d5
Fix scala dependencies.
cmnbroad 2907ec0
Update Spark version.
cmnbroad 3ac0dc0
Repair manifest syntax.
cmnbroad 87f6d6f
Clean up build aand test files.
cmnbroad 8aba940
Java 17 doclets.
cmnbroad 3eed060
Port gatkWDLGen doclet to Java 17.
cmnbroad dbb7a36
Update to Barclay 5.0.0.
cmnbroad d4e9ec9
Rebase, resolve, clean up.
cmnbroad a97d6b4
Upgrade to Picard 3.0.0.
cmnbroad 4216a03
Fix ClassFinder references.
cmnbroad 3e9c1a4
Remove javadoc command from WDLGen and TabCompletion test, since its …
cmnbroad 24267f9
Now on htsjdk 3.0.5.
cmnbroad ab0317e
Remove obsolete jitpack.
cmnbroad 4f4be7e
Remove obsolete (and unnecessary/problematic) langauge directive.
cmnbroad ed3d0dc
Align java version.
cmnbroad b388ac3
Revert "Update ModelSegments expected results for Java 17.0.1+12."
cmnbroad e75cc25
Capture documentation generation integration test output.
cmnbroad d226508
Remove google cloud apt-key update.
cmnbroad 71807a3
Code review comments, plus capture doc gen test output.
cmnbroad 697193d
Restore kryo version change.
cmnbroad 2f24d37
Make docgen smoke tests non-docker only.
cmnbroad 188b680
Remove unused scala version variable.
cmnbroad f83d41c
Revert unnecessary debugging change to IntegrationTestSpec.
cmnbroad c70582c
Revert transient modifier from CachingIndexedFastaSequenceFile.
cmnbroad 4b90179
One more -add-opens.
cmnbroad 664a6ec
And one more --add-opens.
cmnbroad ea8ccc9
Revert "And one more --add-opens."
cmnbroad b4fd63a
Revert "One more -add-opens."
cmnbroad 8cb4522
Revert "Revert transient modifier from CachingIndexedFastaSequenceFile."
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we might want to bump all the actions/*v2 -> actions/*v3. Do not hold this up to do that though....