Document STS delivery process for VDS [VS-727] #8101
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Github actions tests reported job failures from actions build 3518744551
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Codecov Report
Additional details and impacted files@@ Coverage Diff @@
## ah_var_store #8101 +/- ##
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Coverage ? 86.139%
Complexity ? 35079
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Files ? 2173
Lines ? 164868
Branches ? 17686
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Hits ? 142015
Misses ? 16519
Partials ? 6334 |
RoriCremer
reviewed
Nov 22, 2022
| ``` | ||
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| Read the baseline VDS: | ||
| Within the Python REPL created in the preceding steps, read the baseline VDS: | ||
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| ```python | ||
| >>> baseline_vds_path = 'gs://fc-secure-fb908548-fe3c-41d6-adaf-7ac20d541375/submissions/c86a6e8f-71a1-4c38-9e6a-f5229520641e/GvsExtractAvroFilesForHail/efb3dbe8-13e9-4542-8b69-02237ec77ca5/call-OutputPath/2022-10-19-6497f023/dead_alleles_removed_vs_667_249047_samples/gvs_export.vds' |
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oh god must the dead_alleles_removed_vs_667_249047_sample follow us everywhere?!?!!
RoriCremer
reviewed
Nov 22, 2022
| @@ -130,7 +91,7 @@ Yay! | |||
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| ## Write the filtered VDS | |||
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| The following lines take 8 to 10 hours for a Delta-sized VDS using the cluster spec above. As a reminder this cluster | |||
| The following lines take several hours to execute for a Delta-scale VDS. As a reminder the specified cluster config | |||
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do we want to just say 250k sample instead of Delta?
RoriCremer
reviewed
Nov 22, 2022
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| Once Lee has completed his QA procedure, the Variants team can begin the process of delivering the VDS to AoU. The | ||
| designated delivery bucket for AoU callsets is `gs://prod-drc-broad/`. Within the Variants team we refer to callsets | ||
| by their [NATO phonetic alphabet](https://en.wikipedia.org/wiki/NATO_phonetic_alphabet) names (e.g. Charlie, Delta, Echo |
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okokokok I rescind my complaint above
RoriCremer
reviewed
Nov 22, 2022
| the [IAM page for this project](https://console.cloud.google.com/iam-admin/iam?project=terra-b3b4392d) | ||
| and granted my `[email protected]` principal a `Storage Admin` role in the `terra-b3b4392d` project: | ||
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thank you for all the pngs!
RoriCremer
approved these changes
Nov 22, 2022
gbggrant
approved these changes
Nov 22, 2022
This was referenced Mar 17, 2023
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