Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Performed a round of ablation on new annotation-based filtering tools. #8131

Merged
merged 2 commits into from
Sep 22, 2023

Removed Javadoc tags unsupported by Barclay in VETS tool documentatio…

b289752
Select commit
Loading
Failed to load commit list.
Merged

Performed a round of ablation on new annotation-based filtering tools. #8131

Removed Javadoc tags unsupported by Barclay in VETS tool documentatio…
b289752
Select commit
Loading
Failed to load commit list.
Codecov / codecov/patch succeeded Sep 21, 2023 in 1s

58.491% of diff hit (target 86.362%)

View this Pull Request on Codecov

58.491% of diff hit (target 86.362%)

Annotations

Check warning on line 505 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/ScoreVariantAnnotations.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/ScoreVariantAnnotations.java#L505 

Added line #L505 was not covered by tests

Check warning on line 415 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java#L414-L415 

Added lines #L414 - L415 were not covered by tests

Check warning on line 418 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java#L418 

Added line #L418 was not covered by tests

Check warning on line 423 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java#L421-L423 

Added lines #L421 - L423 were not covered by tests

Check warning on line 426 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java#L426 

Added line #L426 was not covered by tests

Check warning on line 458 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java#L456-L458 

Added lines #L456 - L458 were not covered by tests

Check warning on line 478 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModel.java#L478 

Added line #L478 was not covered by tests

Check warning on line 68 in src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/modeling/PythonVariantAnnotationsModel.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/main/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/modeling/PythonVariantAnnotationsModel.java#L68 

Added line #L68 was not covered by tests

Check warning on line 218 in src/test/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModelIntegrationTest.java

See this annotation in the file changed.

@codecov codecov / codecov/patch

src/test/java/org/broadinstitute/hellbender/tools/walkers/vqsr/scalable/TrainVariantAnnotationsModelIntegrationTest.java#L218 

Added line #L218 was not covered by tests
View more details on Codecov