Edit and re-format VDS -> VAT doc [VS-821] #8187
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Additional details and impacted files@@ Coverage Diff @@
## ah_var_store #8187 +/- ##
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Coverage ? 86.181%
Complexity ? 35508
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Files ? 2191
Lines ? 166339
Branches ? 17901
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Hits ? 143352
Misses ? 16601
Partials ? 6386 |
rsasch
changed the title
RoriCremer
reviewed
Feb 11, 2023
| These are the required parameters which must be supplied to the GvsCreateVATfromVDS workflow: | ||
| * `--ancestry_file` GCS pointer to the TSV file that maps `sample_name`s to sub-populations | ||
| * `--vds_path` GCS pointer to the top-level direcotory of the VDS | ||
| * `--sites_only_vcf` (optional, should be pre-populated by the `GvsExtractAvroFilesForHail` workflow) the location to write the sites-only VCF to; save this for the `GvsCreateVATfromVDS` workflow |
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ooooh I didn't realize this was optional...interesting
This was referenced Mar 17, 2023
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