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Updating docker image #8210

Merged
merged 8 commits into from
Feb 16, 2023
Merged

Updating docker image #8210

merged 8 commits into from
Feb 16, 2023

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koncheto-broad
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updating the docker image to fix the failure in CreateFilterSet introduced by my older VSQR-Lite merge.

Successful run here.

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codecov bot commented Feb 16, 2023

Codecov Report

❗ No coverage uploaded for pull request base (ah_var_store@ac04b54). Click here to learn what that means.
The diff coverage is n/a.

❗ Current head b78e14c differs from pull request most recent head 977aec0. Consider uploading reports for the commit 977aec0 to get more accurate results

Additional details and impacted files
@@               Coverage Diff                @@
##             ah_var_store     #8210   +/-   ##
================================================
  Coverage                ?   85.484%           
  Complexity              ?     35314           
================================================
  Files                   ?      2194           
  Lines                   ?    167012           
  Branches                ?     18000           
================================================
  Hits                    ?    142768           
  Misses                  ?     17893           
  Partials                ?      6351           

@koncheto-broad
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George's new docker image seems to contain the gatk updates necessary to fix the issue in CreateFilterSet, so I backed up the updates to make that use the docker image Miguel created for me. I kept the typo change and the update to the import docker. Might require another PR after this to ensure that the jar referenced in the beta pipeline is compatible with our VQSR work, though!

@koncheto-broad koncheto-broad merged commit 7b4091a into ah_var_store Feb 16, 2023
@koncheto-broad koncheto-broad deleted the updating_docker_image branch February 16, 2023 20:14
This was referenced Mar 17, 2023
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3 participants